RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 UFSP2Q9NUQ7 469 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 GHRLQ9UBU3 117 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 FBLN5Q9UBX5 448 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 ETV7Q9Y603 341 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 MTORP42345 2549 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 ANK3Q12955 4377 aaKnown RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 IGKV1-9A0A0C4DH69 117 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 TMEM210A6NLX4 147 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 LRRC30A6NM36 301 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 ZNF850A8MQ14 1090 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 A8MV72 311 aaPredicted RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 LMX1BO60663 402 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 CLPXO76031 633 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 IGHV2-70P01814 119 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 GRPP07492 148 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 IRF2P14316 349 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 AZGP1P25311 298 aaKnown RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 TGFBR1P36897 503 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 RBP2P50120 134 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 BTG1P62324 171 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 HOXA4Q00056 320 aaPredicted RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 MXD1Q05195 221 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 ZMYND11Q15326 602 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 UBE2V2Q15819 145 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 FAM189A2Q15884 450 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 FAM76BQ5HYJ3 339 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 FAM201AQ5SY85 155 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 DDI2Q5TDH0 399 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 MZT2AQ6P582 158 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 NR2C2APQ86WQ0 139 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 LINC01356Q8N9X3 169 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 PNLDC1Q8NA58 520 aaKnown RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 ZSCAN4Q8NAM6 433 aaPredicted RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 OR13C9Q8NGT0 318 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 PIGCQ92535 297 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 ERGIC1Q969X5 290 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 PTX4Q96A99 478 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 ITPKCQ96DU7 683 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 C1orf159Q96HA4 380 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 HIST1H2AAQ96QV6 131 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 GFI1Q99684 422 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 GAL3ST1Q99999 423 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 DCUN1D5Q9BTE7 237 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 BARHL1Q9BZE3 327 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 FN3KRPQ9HA64 309 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 RHOFQ9HBH0 211 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 LPAR2Q9HBW0 351 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 RABL2AQ9UBK7 228 aaPredicted RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 STEAP1Q9UHE8 339 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 RABL2BQ9UNT1 228 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 AK6Q9Y3D8 172 aaKnown RBP8.28□□□□□ -1.08
CLN3-261ENST00000637686 PEX16Q9Y5Y5 336 aa8.28□□□□□ -1.08
CLN3-261ENST00000637686 A6NLC8 198 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 B4DSR2 109 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 H3BSH0 61 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 TPPPO94811 219 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 PTBP3O95758 552 aaKnown RBP8.27□□□□□ -1.09
CLN3-261ENST00000637686 IGHV2-5P01817 119 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 MAS1P04201 325 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 ACAA1P09110 424 aaPredicted RBP8.27□□□□□ -1.09
CLN3-261ENST00000637686 CLEC2LP0C7M8 214 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 OCMP0CE72 109 aaPredicted RBP8.27□□□□□ -1.09
CLN3-261ENST00000637686 HTR2CP28335 458 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 THBS2P35442 1172 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 ZNF93P35789 620 aaPredicted RBP8.27□□□□□ -1.09
CLN3-261ENST00000637686 ATP1B3P54709 279 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 GNG3P63215 75 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 PRDX4Q13162 271 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 KISS1Q15726 138 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 ZNF181Q2M3W8 571 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 ASCL4Q6XD76 172 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 ZNF826PQ6ZT77 177 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 WDR86Q86TI4 376 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 LRRC28Q86X40 367 aaPredicted RBP8.27□□□□□ -1.09
CLN3-261ENST00000637686 SAXO1Q8IYX7 474 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 C1orf87Q8N0U7 546 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 PXT1Q8NFP0 134 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 OR52N4Q8NGI2 321 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 OR51A2Q8NGJ7 313 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 OR11L1Q8NGX0 322 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 MCFD2Q8NI22 146 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 Q8TCH9 128 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 OR5P3Q8WZ94 311 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 RAB39BQ96DA2 213 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 BORCS8Q96FH0 119 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 WDFY2Q96P53 400 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 MICU1Q9BPX6 476 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 PKIBQ9C010 78 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 C14orf119Q9NWQ9 140 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 C1orf123Q9NWV4 160 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 ADAM30Q9UKF2 790 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 KCNS2Q9ULS6 477 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 SPATA2Q9UM82 520 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 PCDHB10Q9UN67 800 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 TLN2Q9Y4G6 2542 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 MALRD1Q5VYJ5 2156 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 HIVEP2P31629 2446 aa8.27□□□□□ -1.09
CLN3-261ENST00000637686 PPIAL4EA0A075B759 164 aa8.26□□□□□ -1.09
CLN3-261ENST00000637686 hCG_1807616A0A1W2PRN6 198 aa8.26□□□□□ -1.09
CLN3-261ENST00000637686 PQLC2LA1A4F0 135 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms