RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 DCTN5Q9BTE1 182 aa13.2□□□□□ -0.3
BRCA1-228ENST00000618469 SIRPDQ9H106 197 aa13.2□□□□□ -0.3
BRCA1-228ENST00000618469 DCLRE1BQ9H816 532 aa13.2□□□□□ -0.3
BRCA1-228ENST00000618469 ELL3Q9HB65 397 aaPredicted RBP13.2□□□□□ -0.3
BRCA1-228ENST00000618469 FGF20Q9NP95 211 aaPredicted RBP13.2□□□□□ -0.3
BRCA1-228ENST00000618469 RASL12Q9NYN1 266 aa13.2□□□□□ -0.3
BRCA1-228ENST00000618469 IRGMA1A4Y4 181 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 RFPL4AA6NLU0 287 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 E9PI62 339 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 RFPL4AL1F8VTS6 287 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 GPR37O15354 613 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 GNAO1P09471 354 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 CCDC159P0C7I6 412 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 AZGP1P25311 298 aaKnown RBP13.19□□□□□ -0.3
BRCA1-228ENST00000618469 POU3F4P49335 361 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 CEBPDP49716 269 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-228ENST00000618469 FUT6P51993 359 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 CAPZA1P52907 286 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 GBX2P52951 348 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-228ENST00000618469 ARF6P62330 175 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 IL24Q13007 206 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 RUSC1-AS1Q66K80 236 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 C8orf59Q8N0T1 100 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-228ENST00000618469 ZNRF1Q8ND25 227 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 TSEN15Q8WW01 171 aaKnown RBP13.19□□□□□ -0.3
BRCA1-228ENST00000618469 SLAMF9Q96A28 289 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 JAM3Q9BX67 310 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 COMMD4Q9H0A8 199 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 ESM1Q9NQ30 184 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 OR14J1Q9UGF5 321 aa13.19□□□□□ -0.3
BRCA1-228ENST00000618469 IGKV1-9A0A0C4DH69 117 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 MDFIC2A0A1B0GVS7 189 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 A0A1W2PQ09 198 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 TMEM212A6NML5 194 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 TRIM77I1YAP6 450 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 NOS1APO75052 506 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 INMTO95050 263 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 ZFPL1O95159 310 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 OCM2P0CE71 109 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 OCMP0CE72 109 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 ATF1P18846 271 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 MYL12AP19105 171 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 DCKP27707 260 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 RBP2P50120 134 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 ETV1P50549 477 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 CAV3P56539 151 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 DEFA6Q01524 100 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 PDLIM3Q53GG5 364 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 OR2G6Q5TZ20 316 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 C9orf139Q6ZV77 190 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 SLC25A26Q70HW3 274 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 UTS2BQ765I0 119 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 LY6G5BQ8NDX9 201 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 OR13C9Q8NGT0 318 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 OR5AK2Q8NH90 309 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 ZFAND2BQ8WV99 257 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 SDSLQ96GA7 329 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 CEP19Q96LK0 163 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 ZNF48Q96MX3 618 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 OPALINQ96PE5 141 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 PDCD1LG2Q9BQ51 273 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 HES4Q9HCC6 221 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 NKX1-2Q9UD57 310 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 DIMT1Q9UNQ2 313 aaKnown RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 MAB21L2Q9Y586 359 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 SOX21Q9Y651 276 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-228ENST00000618469 KPTNQ9Y664 436 aa13.18□□□□□ -0.3
BRCA1-228ENST00000618469 TRBV2A0A0J9YWF9 115 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 DNAJC9-AS1A6NH13 148 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 H0YAE9 185 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 SLC1A7O00341 560 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 PRKACBP22694 351 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 GTF2A1P52655 376 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-228ENST00000618469 ATP1B3P54709 279 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 XAF1Q6GPH4 301 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 VMO1Q7Z5L0 202 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 EGFL6Q8IUX8 553 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 CMTM4Q8IZR5 234 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 CD177Q8N6Q3 437 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 ZDHHC22Q8N966 263 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 DNAAF1Q8NEP3 725 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 C8orf46Q8TAG6 207 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 HAVCR2Q8TDQ0 301 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 LHX4Q969G2 390 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 SPSB1Q96BD6 273 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 DUX5Q96PT3 197 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 CNTD2Q9H8S5 307 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 MTCH1Q9NZJ7 389 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 CAB39Q9Y376 341 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-228ENST00000618469 EXOSC1Q9Y3B2 195 aaKnown RBP13.17□□□□□ -0.3
BRCA1-228ENST00000618469 HSPE1-MOB4S4R3N1 261 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 PKD1L1Q8TDX9 2849 aa13.17□□□□□ -0.3
BRCA1-228ENST00000618469 TMEM89A2RUT3 159 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 KNG1P01042 644 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 MTCP1P56278 107 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 ERVK11-1P61568 191 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 UBA52P62987 128 aaKnown RBP13.16□□□□□ -0.3
BRCA1-228ENST00000618469 SLC34A1Q06495 639 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 CDK5R1Q15078 307 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 PDCD1Q15116 288 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms