RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FNDC7Q5VTL7 733 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 ALKBH2Q6NS38 261 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 CMTM1Q8IZ96 169 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 LILRB2Q8N423 598 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 HIST1H2BAQ96A08 127 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 GNRHR2Q96P88 292 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 SLC25A31Q9H0C2 315 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 CARHSP1Q9Y2V2 147 aaKnown RBP11.09□□□□□ -0.63
LIG1-221ENST00000613670 CYB5BO43169 146 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 HLA-HP01893 362 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 FASLGP48023 281 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 IDH3GP51553 393 aaPredicted RBP11.09□□□□□ -0.63
LIG1-221ENST00000613670 B2MP61769 119 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 DMWDQ09019 674 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 OR10D4PQ8NGN7 298 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 AQP10Q96PS8 301 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 FAM86C1Q9NVL1 165 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 ANXA10Q9UJ72 324 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 LHFPL6Q9Y693 200 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 CACNA1DQ01668 2161 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 C9J4A7 227 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 MELTFP08582 738 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 POLR2GP62487 172 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIG1-221ENST00000613670 ZNF239Q16600 458 aaKnown RBP11.08□□□□□ -0.64
LIG1-221ENST00000613670 SLC16A14Q7RTX9 510 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 ERGIC1Q969X5 290 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 PARP11Q9NR21 331 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 GFOD1Q9NXC2 390 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 PTRH2Q9Y3E5 179 aaKnown RBP11.08□□□□□ -0.64
LIG1-221ENST00000613670 RALGAPA1Q6GYQ0 2036 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 LMO7DNF2Z398 122 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 AP4M1O00189 453 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 IGKV3-11P04433 115 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 SMIM6P0DI80 62 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 ZNF708P17019 499 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 DCDP81605 110 aaKnown RBP11.08□□□□□ -0.64
LIG1-221ENST00000613670 BCO1Q9HAY6 547 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 BARX1Q9HBU1 254 aaPredicted RBP11.08□□□□□ -0.64
LIG1-221ENST00000613670 ZNF727A8MUV8 499 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 DHHO43323 396 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 GPR137BO60478 399 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 ACAA1P09110 424 aaPredicted RBP11.08□□□□□ -0.64
LIG1-221ENST00000613670 IFI6P09912 130 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 ECI1P42126 302 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 TMEM230Q96A57 120 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 ALKBH3Q96Q83 286 aaPredicted RBP11.08□□□□□ -0.64
LIG1-221ENST00000613670 OCSTAMPQ9BR26 566 aa11.08□□□□□ -0.64
LIG1-221ENST00000613670 IGHV1OR21-1A0A087WYE8 117 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 DHRS7CA6NNS2 312 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 DHRS3O75911 302 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 SHBQ15464 509 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 PPP1R3BQ86XI6 285 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 OR11L1Q8NGX0 322 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 ZNF845Q96IR2 970 aaPredicted RBP11.07□□□□□ -0.64
LIG1-221ENST00000613670 GPHA2Q96T91 129 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 FGF16O43320 207 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 POU2F2P09086 479 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 CD79AP11912 226 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 B4GALT1P15291 398 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 MSX1P28360 303 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 SLC25A26Q70HW3 274 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 LFNGQ8NES3 379 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 SH3BGRL3Q9H299 93 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 NAA60Q9H7X0 242 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 GAR1Q9NY12 217 aaKnown RBP11.07□□□□□ -0.64
LIG1-221ENST00000613670 CACNA1EQ15878 2313 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 ESPL1Q14674 2120 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 SSX9Q7RTT3 188 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 AAED1Q7RTV5 226 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 MAML2Q8IZL2 1156 aaPredicted RBP11.07□□□□□ -0.64
LIG1-221ENST00000613670 POC1AQ8NBT0 407 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 PP6455Q8WZ26 134 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 STRAPQ9Y3F4 350 aaKnown RBP11.07□□□□□ -0.64
LIG1-221ENST00000613670 LIPGQ9Y5X9 500 aa11.07□□□□□ -0.64
LIG1-221ENST00000613670 ZNHIT1O43257 154 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 NDUFA2O43678 99 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 RAMP1O60894 148 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 NRASP01111 189 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 THBS4P35443 961 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 PPP1CCP36873 323 aaKnown RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 YRDCQ86U90 279 aaKnown RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 THNSL2Q86YJ6 484 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 OR5AS1Q8N127 324 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 RTBDNQ9BSG5 229 aaPredicted RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 A0A087WZY1 265 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 MEX3AA1L020 520 aaKnown RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 CTSDP07339 412 aaPredicted RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 GALNSP34059 522 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 TESK1Q15569 626 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 DPPA2Q7Z7J5 298 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 MCEMP1Q8IX19 187 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 NECAP1Q8NC96 275 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 APCDD1LQ8NCL9 501 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 OR5C1Q8NGR4 320 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 PRO1933Q9H354 126 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 CYTL1Q9NRR1 136 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 IGHV3-64DA0A0J9YX35 117 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 MBPP02686 304 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms