RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SLC25A38Q96DW6 304 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 C1orf147Q96MC9 270 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-209ENST00000597423 OR2V2Q96R30 315 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 SELENOIQ9C0D9 397 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CBLN4Q9NTU7 201 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 RASL12Q9NYN1 266 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 GLS2Q9UI32 602 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 MRPS7Q9Y2R9 242 aaKnown RBP12.94□□□□□ -0.34
TRIM28-209ENST00000597423 LRRC30A6NM36 301 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 IFNL4K9M1U5 179 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 NOS1APO75052 506 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-209ENST00000597423 INHBBP09529 407 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 IRF2P14316 349 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 MNDAP41218 407 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 GATA4P43694 442 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 EFNB2P52799 333 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 RPS27AP62979 156 aaKnown RBP12.93□□□□□ -0.34
TRIM28-209ENST00000597423 UNC119Q13432 240 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 SWI5Q1ZZU3 235 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 MST1LQ2TV78 715 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 CHST4Q8NCG5 386 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 TMEM104Q8NE00 496 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 OR10K1Q8NGX5 313 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 BORCS5Q969J3 196 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 SOSTQ9BQB4 213 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 TM2D1Q9BX74 207 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 BANF2Q9H503 90 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 C1orf123Q9NWV4 160 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 MTCH1Q9NZJ7 389 aa12.93□□□□□ -0.34
TRIM28-209ENST00000597423 ANKHD1Q8IWZ3 2542 aaKnown RBP12.93□□□□□ -0.34
TRIM28-209ENST00000597423 IGKV1-12A0A0C4DH73 117 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 hCG_1807616A0A1W2PRN6 198 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A10PA6NDY2 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A18PA6NE21 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A16PA6NEW6 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A20PA6NIJ5 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A8PA6NJQ4 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A7PA6NKC0 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A22PA8MWA6 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A12PA8MX19 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A5PA8MXJ8 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A23PA8MXZ1 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 SYNGR1O43759 233 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 NXPH2O95156 264 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 IGKV1D-12P01611 117 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A15PP0C7V4 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A13PP0C7W8 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A14PP0C7W9 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A24PP0C7X0 464 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 RNF224P0DH78 156 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 PGA5P0DJD9 388 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 BCL3P20749 454 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 CDK2P24941 298 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 CFHR2P36980 270 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 PPOXP50336 477 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FGF12P61328 243 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 MRPS10P82664 201 aaKnown RBP12.92□□□□□ -0.34
TRIM28-209ENST00000597423 NHLRC3Q5JS37 347 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 WDR86Q86TI4 376 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 LINC00596Q86U02 117 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM58AQ8N1B3 248 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 MFSD4AQ8N468 514 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 FAM89BQ8N5H3 189 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 POC1AQ8NBT0 407 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 OR10R2Q8NGX6 335 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 ITLN1Q8WWA0 313 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 GTF3AQ92664 365 aaKnown RBP12.92□□□□□ -0.34
TRIM28-209ENST00000597423 RAB1BQ9H0U4 201 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 LPAR5Q9H1C0 372 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 UFSP2Q9NUQ7 469 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 ST3GAL6Q9Y274 331 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 CADP27708 2225 aa12.92□□□□□ -0.34
TRIM28-209ENST00000597423 TRAV18A0A075B6X5 111 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 SFTPBP07988 381 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 VEGFCP49767 419 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 TLE4Q04727 773 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 PRAMEF6Q5VXH4 476 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 C16orf87Q6PH81 154 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 MOGAT3Q86VF5 341 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 C11orf53Q8IXP5 236 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 EMG1Q92979 244 aaKnown RBP12.91□□□□□ -0.34
TRIM28-209ENST00000597423 RAB3CQ96E17 227 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 NEDD4LQ96PU5 975 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 GAL3ST1Q99999 423 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 NRIP2Q9BQI9 281 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 CCDC32Q9BV29 185 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 KCNK15Q9H427 330 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 SAP30LQ9HAJ7 183 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 SPACA1Q9HBV2 294 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 PPP1R3CQ9UQK1 317 aa12.91□□□□□ -0.34
TRIM28-209ENST00000597423 SPTBN1Q01082 2364 aaKnown RBP12.9□□□□□ -0.34
TRIM28-209ENST00000597423 CTDSPLO15194 276 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 RHBDL1O75783 438 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 BLVRBP30043 206 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-209ENST00000597423 NPBWR2P48146 333 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 TAS2R20P59543 309 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 CCL8P80075 99 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 PLA2G7Q13093 441 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 IL13RA2Q14627 380 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 MPPED2Q15777 294 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms