RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SMIM31A0A1B0GVY4 71 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 MEX3AA1L020 520 aaKnown RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 RFPL4AA6NLU0 287 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 POM121CA8CG34 1229 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 RFPL4AL1F8VTS6 287 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 ZNF254O75437 659 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 PGA5P0DJD9 388 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 SMIM18P0DKX4 95 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 ATP6V1B1P15313 513 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 CCL1P22362 96 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 GLRA1P23415 457 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 RIDAP52758 137 aaKnown RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 DLX6P56179 175 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 PROK1P58294 105 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 CDC42P60953 191 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 RIPPLY1Q0D2K3 151 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 UBE2V2Q15819 145 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 SMN1Q16637 294 aaKnown RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 ODF4Q2M2E3 257 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 C11orf91Q3C1V1 193 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 RBM48Q5RL73 367 aaKnown RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 PLCXD3Q63HM9 321 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 KCTD18Q6PI47 426 aaPredicted RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 CRIP3Q6Q6R5 217 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 Q6ZSV7 163 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 SLC36A1Q7Z2H8 476 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 CATSPERDQ86XM0 798 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 RDH10Q8IZV5 341 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 TMEM86BQ8N661 226 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 POC1AQ8NBT0 407 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 TSPAN14Q8NG11 270 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 RHOXF1Q8NHV9 184 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 PPP1R35Q8TAP8 253 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 FBLIM1Q8WUP2 373 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 ASB17Q8WXJ9 295 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 H1FXQ92522 213 aaKnown RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 CITED1Q99966 193 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 NRIP2Q9BQI9 281 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 MROQ9BYG7 248 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 DNTTIP1Q9H147 329 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 SLITRK2Q9H156 845 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 HES4Q9HCC6 221 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 CLN6Q9NWW5 311 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 ZNRD1Q9P1U0 126 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 IL36RNQ9UBH0 155 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 SLC25A10Q9UBX3 287 aaPredicted RBP8.55□□□□□ -1.04
LIG1-213ENST00000596672 OR52A1Q9UKL2 312 aa8.55□□□□□ -1.04
LIG1-213ENST00000596672 A0A1B0GVI7 797 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 PTGES3LE9PB15 166 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 LOC110117498-PIK3R3F6TDL0 507 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 J3QRE1 110 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 NPFFO15130 113 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 XPNPEP2O43895 674 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 NOS1APO75052 506 aaPredicted RBP8.54□□□□□ -1.04
LIG1-213ENST00000596672 WBP4O75554 376 aaKnown RBP8.54□□□□□ -1.04
LIG1-213ENST00000596672 DHRS3O75911 302 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 RPP14O95059 124 aaKnown RBP8.54□□□□□ -1.04
LIG1-213ENST00000596672 NRASP01111 189 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 CCL3L1P16619 93 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 EEF1B2P24534 225 aaKnown RBP8.54□□□□□ -1.04
LIG1-213ENST00000596672 MPZP25189 248 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 SAA4P35542 130 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 GABRA2P47869 451 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 CAV3P56539 151 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 ZNF273Q14593 569 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 KCTD21Q4G0X4 260 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 LCN1P1Q5VSP4 162 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 TMEM200BQ69YZ2 307 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 TCF23Q7RTU1 214 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 DYNAPQ8N1N2 210 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 OR10AC1Q8NH08 325 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 PIFOQ8TCI5 191 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 APH1BQ8WW43 257 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 SSMEM1Q8WWF3 244 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 SGCDQ92629 289 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 MTCH1Q9NZJ7 389 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 SIGLEC9Q9Y336 463 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 POMT1Q9Y6A1 747 aa8.54□□□□□ -1.04
LIG1-213ENST00000596672 IGKV1-9A0A0C4DH69 117 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 CLPSL1A2RUU4 121 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 OR5B21A6NL26 309 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 J3QT63 122 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 SLC1A7O00341 560 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 JUNBP17275 347 aaPredicted RBP8.53□□□□□ -1.04
LIG1-213ENST00000596672 NDUFB7P17568 137 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 GABRB1P18505 474 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 CRHBPP24387 322 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 HTR1FP30939 366 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 PRDX2P32119 198 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 HAAOP46952 286 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 NANOS3P60323 173 aaKnown RBP8.53□□□□□ -1.04
LIG1-213ENST00000596672 ZNF829Q3KNS6 432 aaPredicted RBP8.53□□□□□ -1.04
LIG1-213ENST00000596672 LRRC10Q5BKY1 277 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 CLVS2Q5SYC1 327 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 ZBTB37Q5TC79 503 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 OLFML2AQ68BL7 652 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 ASPHD2Q6ICH7 369 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 C1orf122Q6ZSJ8 110 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 MKXQ8IYA7 352 aa8.53□□□□□ -1.04
LIG1-213ENST00000596672 ZSCAN4Q8NAM6 433 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms