RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 TFF1P04155 84 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 CCDC159P0C7I6 412 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 DCKP27707 260 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 GBX2P52951 348 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ERVK11-1P61568 191 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ARF6P62330 175 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 UBA52P62987 128 aaKnown RBP13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ADARB1P78563 741 aaKnown RBP13.37□□□□□ -0.27
TRIM28-206ENST00000595974 GABPB1Q06547 395 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ANGPTL5Q86XS5 388 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 TMEM185AQ8NFB2 350 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 OR13C3Q8NGS6 347 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 CNIH3Q8TBE1 160 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ZNF48Q96MX3 618 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ONECUT1Q9UBC0 465 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 MAB21L2Q9Y586 359 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ANK2Q01484 3957 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 IGKV1-27A0A075B6S5 117 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 TRBV23-1A0A0A0MS06 115 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 DNAJC9-AS1A6NH13 148 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 RFPL4AA6NLU0 287 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 RFPL4AL1F8VTS6 287 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 SLC1A7O00341 560 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 KNG1P01042 644 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 LIMS3P0CW19 117 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 LIMS4P0CW20 117 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 NDUFB7P17568 137 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 PRKACBP22694 351 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 RBP2P50120 134 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 ACTG1P63261 375 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 BRD3OSQ6XYD6 125 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 ZNF561Q8N587 486 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 ZNRF1Q8ND25 227 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 OR51A4Q8NGJ6 313 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 OR10AC1Q8NH08 325 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 GATAD2BQ8WXI9 593 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 SPSB1Q96BD6 273 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 FGGYQ96C11 551 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 CEP19Q96LK0 163 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 COMMD4Q9H0A8 199 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 VCXQ9H320 206 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 DCLRE1BQ9H816 532 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 HSPE1-MOB4S4R3N1 261 aa13.36□□□□□ -0.27
TRIM28-206ENST00000595974 IGKV1-9A0A0C4DH69 117 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 CENPVL3A0A0U1RRI6 287 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 H0YAE9 185 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 ATF1P18846 271 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 PRTN3P24158 256 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 AZGP1P25311 298 aaKnown RBP13.35□□□□□ -0.27
TRIM28-206ENST00000595974 CAPGP40121 348 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 ATP1B3P54709 279 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 BAMBIQ13145 260 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 METAP1DQ6UB28 335 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-206ENST00000595974 LHFPL2Q6ZUX7 228 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 SLC25A26Q70HW3 274 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 VMO1Q7Z5L0 202 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 Q8IYB0 196 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 CD177Q8N6Q3 437 aa13.35□□□□□ -0.27
TRIM28-206ENST00000595974 CAB39Q9Y376 341 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-206ENST00000595974 IGHV1-69DA0A0B4J2H0 117 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 A0A1W2PQ09 198 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 E9PI62 339 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 CLDN34H7C241 214 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 M0R1W7 72 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 ZFPL1O95159 310 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 IGHV1-69P01742 117 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 MT-ND2P03891 347 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 OCM2P0CE71 109 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 OCMP0CE72 109 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-206ENST00000595974 MYL12AP19105 171 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 PRDX2P32119 198 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 CAPZA1P52907 286 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 MED21Q13503 144 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 RUSC1-AS1Q66K80 236 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 TMPRSS11AQ6ZMR5 421 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 C1orf122Q6ZSJ8 110 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 C8orf59Q8N0T1 100 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-206ENST00000595974 BATF2Q8N1L9 274 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 OR5AK2Q8NH90 309 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 LHX4Q969G2 390 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 SLAMF9Q96A28 289 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 C1orf147Q96MC9 270 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-206ENST00000595974 OPALINQ96PE5 141 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 PRDM13Q9H4Q3 707 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 ELL3Q9HB65 397 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-206ENST00000595974 NEK6Q9HC98 313 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 MTCH1Q9NZJ7 389 aa13.34□□□□□ -0.27
TRIM28-206ENST00000595974 DIMT1Q9UNQ2 313 aaKnown RBP13.34□□□□□ -0.27
TRIM28-206ENST00000595974 EXOSC1Q9Y3B2 195 aaKnown RBP13.34□□□□□ -0.27
TRIM28-206ENST00000595974 TRBV2A0A0J9YWF9 115 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 CYB5AP00167 134 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 POU3F4P49335 361 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 CEBPDP49716 269 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-206ENST00000595974 ETV1P50549 477 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 MTCP1P56278 107 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 GUCA2AQ02747 115 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 DEFB112Q30KQ8 113 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 CCDC58Q4VC31 144 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 MKXQ8IYA7 352 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 OR13C9Q8NGT0 318 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms