RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PSG2P11465 335 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 GABRA2P47869 451 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 IL13RA1P78552 427 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 DMKNQ6E0U4 476 aaPredicted RBP12.48□□□□□ -0.41
UPF1-202ENST00000594243 C1orf229Q6ZS94 237 aaPredicted RBP12.48□□□□□ -0.41
UPF1-202ENST00000594243 C1QL2Q7Z5L3 287 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 PRIMA1Q86XR5 153 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 PNLDC1Q8NA58 520 aaKnown RBP12.48□□□□□ -0.41
UPF1-202ENST00000594243 OR13C9Q8NGT0 318 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 ST8SIA4Q92187 359 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 GHSRQ92847 366 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 CNBD2Q96M20 576 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 ZNF488Q96MN9 340 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 NRIP2Q9BQI9 281 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 MND1Q9BWT6 205 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 SMURF1Q9HCE7 757 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 OPN4Q9UHM6 478 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 SIRT4Q9Y6E7 314 aaPredicted RBP12.48□□□□□ -0.41
UPF1-202ENST00000594243 MAGEB3O15480 346 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 SULT1B1O43704 296 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 CD1AP06126 327 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 PPIAL4GP0DN37 164 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 AMY2BP19961 511 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 SOX2P48431 317 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 ERVK11-1P61568 191 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 SLC35A2P78381 396 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 IKZF1Q13422 519 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 YIF1BQ5BJH7 314 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 SLC25A26Q70HW3 274 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 BTN2A1Q7KYR7 527 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 Q8IYB0 196 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 FAM216BQ8N7L0 139 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 DACT3Q96B18 629 aaPredicted RBP12.47□□□□□ -0.41
UPF1-202ENST00000594243 CPNE2Q96FN4 548 aaPredicted RBP12.47□□□□□ -0.41
UPF1-202ENST00000594243 CEP19Q96LK0 163 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 DMRTB1Q96MA1 342 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 GAFA1Q96PS6 74 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 Q9H521 79 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 DUSP21Q9H596 190 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 HES4Q9HCC6 221 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 MTCH1Q9NZJ7 389 aa12.47□□□□□ -0.41
UPF1-202ENST00000594243 MALRD1Q5VYJ5 2156 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 IGKV1D-17A0A075B6S4 117 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 RFPL4AA6NLU0 287 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 RFPL4AL1F8VTS6 287 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 SIGLEC5O15389 551 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 PLATP00750 562 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 HCKP08631 526 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 ADRA2CP18825 462 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 CELP19835 753 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 RAB3AP20336 220 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 CRHBPP24387 322 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 PRDX2P32119 198 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 BDH1Q02338 343 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 ACSM1Q08AH1 577 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 PDZK1IP1Q13113 114 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 ARMCX4Q5H9R4 360 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 RBM48Q5RL73 367 aaKnown RBP12.46□□□□□ -0.41
UPF1-202ENST00000594243 ZFP41Q8N8Y5 198 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 RGP1Q92546 391 aaPredicted RBP12.46□□□□□ -0.41
UPF1-202ENST00000594243 TMEM106AQ96A25 262 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 SLAMF9Q96A28 289 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 SDSLQ96GA7 329 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 ZNF184Q99676 751 aaPredicted RBP12.46□□□□□ -0.41
UPF1-202ENST00000594243 PAK1IP1Q9NWT1 392 aaPredicted RBP12.46□□□□□ -0.41
UPF1-202ENST00000594243 SLC25A10Q9UBX3 287 aaPredicted RBP12.46□□□□□ -0.41
UPF1-202ENST00000594243 ZNF222Q9UK12 451 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 BLOC1S6Q9UL45 172 aa12.46□□□□□ -0.41
UPF1-202ENST00000594243 A0A1B0GW55 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 C22orf46C9J442 243 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 RGS10O43665 173 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 KNG1P01042 644 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L2P0CJ85 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L3P0CJ86 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L4P0CJ87 422 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L5P0CJ88 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L6P0CJ89 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L7P0CJ90 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 POU3F4P49335 361 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 CAV3P56539 151 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 SPHARQ15513 63 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 KISS1Q15726 138 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DGUOKQ16854 277 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 Q499Y3 187 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4L9Q6RFH8 374 aaPredicted RBP12.45□□□□□ -0.42
UPF1-202ENST00000594243 FIP1L1Q6UN15 594 aaKnown RBP12.45□□□□□ -0.42
UPF1-202ENST00000594243 BATF2Q8N1L9 274 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 ZNF561Q8N587 486 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 PGLYRP3Q96LB9 341 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 CNTD2Q9H8S5 307 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 RHOFQ9HBH0 211 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 DUX4Q9UBX2 424 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 RPUSD1Q9UJJ7 312 aaKnown RBP12.45□□□□□ -0.42
UPF1-202ENST00000594243 MAB21L2Q9Y586 359 aa12.45□□□□□ -0.42
UPF1-202ENST00000594243 TRBV5-5A0A0J9YX44 114 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 PNMA8CA0A1B0GUJ8 204 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 ZNF879B4DU55 563 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 DENRO43583 198 aaKnown RBP12.44□□□□□ -0.42
UPF1-202ENST00000594243 SPRY1O43609 319 aaPredicted RBP12.44□□□□□ -0.42
UPF1-202ENST00000594243 FCN3O75636 299 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms