RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRAV38-1A0A0B4J264 116 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 C1QTNF9BB2RNN3 333 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 SEC14L6B5MCN3 397 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 TSPAN15O95858 294 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 C1QTNF9P0C862 333 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 Q0VFX4 171 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 ATXN7L3Q14CW9 347 aaPredicted RBP8.62□□□□□ -1.03
LIG3-216ENST00000593099 LBHQ53QV2 105 aaPredicted RBP8.62□□□□□ -1.03
LIG3-216ENST00000593099 LAX1Q8IWV1 398 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 FAM58AQ8N1B3 248 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 OR1S1Q8NH92 325 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 TMEM45BQ96B21 275 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 SEC22CQ9BRL7 303 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 NECAP2Q9NVZ3 263 aa8.62□□□□□ -1.03
LIG3-216ENST00000593099 CISD1Q9NZ45 108 aaKnown RBP8.62□□□□□ -1.03
LIG3-216ENST00000593099 OR5H1A6NKK0 313 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 F5H0A9 414 aaPredicted RBP8.61□□□□□ -1.03
LIG3-216ENST00000593099 H3BMH7 237 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 OR10K2Q6IF99 312 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ZNF770Q6IQ21 691 aaPredicted RBP8.61□□□□□ -1.03
LIG3-216ENST00000593099 GABRG1Q8N1C3 465 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ARL11Q969Q4 196 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 LINC00470Q9BZP3 86 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 PTTG1O95997 202 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 APOA2P02652 100 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ZNF728P0DKX0 622 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 GDNFP39905 211 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 MEOX2P50222 304 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 MMP16P51512 607 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ZNF85Q03923 595 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 EGR4Q05215 589 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 Q6ZS92 163 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 DTX1Q86Y01 620 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 PRSS35Q8N3Z0 413 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ARHGEF39Q8N4T4 335 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ANGPTL6Q8NI99 470 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ZDHHC16Q969W1 377 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 C10orf35Q96D05 121 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 OR2J1Q9GZK6 312 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 EIF5A2Q9GZV4 153 aaKnown RBP8.61□□□□□ -1.03
LIG3-216ENST00000593099 MGAT4CQ9UBM8 478 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 A3GALT2U3KPV4 340 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 KIAA1324LA8MWY0 1029 aaPredicted RBP8.61□□□□□ -1.03
LIG3-216ENST00000593099 E9PLN8 166 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 ADAM20O43506 726 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 SEMG1P04279 462 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 FUT3P21217 361 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 FHITP49789 147 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 F2RL1P55085 397 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 LRRC37A5PQ49AS3 106 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 OR10X1Q8NGY0 326 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 VKORC1Q9BQB6 163 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 TUBD1Q9UJT1 453 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 CCDC88CQ9P219 2028 aa8.61□□□□□ -1.03
LIG3-216ENST00000593099 KIAA1671Q9BY89 1806 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 A1L4Q6 167 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 DUSP1P28562 367 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 UCP2P55851 309 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 PRSS12P56730 875 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 FAM27D1Q5T7N8 215 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 ZNF519Q8TB69 540 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 PLPPR2Q96GM1 343 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 TMEM30CPA0ZSE6 113 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 LRRC3CA6NJW4 275 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 C3orf80F5H4A9 247 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 ARPC1BO15143 372 aaKnown RBP8.6□□□□□ -1.03
LIG3-216ENST00000593099 SMIM18P0DKX4 95 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 LHX2P50458 406 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 CYCSP99999 105 aaKnown RBP8.6□□□□□ -1.03
LIG3-216ENST00000593099 STEAP1BQ6NZ63 245 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 VWA1Q6PCB0 445 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 OR10AD1Q8NGE0 317 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 OR2D3Q8NGH3 330 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 SCGB1C1Q8TD33 95 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 S1PR3Q99500 378 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 SUCNR1Q9BXA5 334 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 SAMD10Q9BYL1 202 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 RNF7Q9UBF6 113 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 GOLT1BQ9Y3E0 138 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 NUBP2Q9Y5Y2 271 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 PRAF2O60831 178 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 TUSC2O75896 110 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 TOXO94900 526 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 CLDN18P56856 261 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 TIMM23BQ5SRD1 257 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 DMBX1Q8NFW5 382 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 DIRC2Q96SL1 478 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 TIMM8BQ9Y5J9 83 aaPredicted RBP8.6□□□□□ -1.03
LIG3-216ENST00000593099 DIDO1Q9BTC0 2240 aaKnown RBP8.6□□□□□ -1.03
LIG3-216ENST00000593099 UPK1BO75841 260 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 CSF3P09919 207 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 GAAP10253 952 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 PTGFRP43088 359 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 NDUFA6P56556 154 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 IL13RA1P78552 427 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 MOGAT3Q86VF5 341 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 PARP16Q8N5Y8 322 aa8.6□□□□□ -1.03
LIG3-216ENST00000593099 INTS1Q8N201 2190 aaKnown RBP8.59□□□□□ -1.03
LIG3-216ENST00000593099 PINLYPA6NC86 204 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 ZNF354AO60765 605 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms