RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 CLDN12P56749 244 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 LOXL1Q08397 574 aaPredicted RBP17■□□□□ 0.31
ATG4D-208ENST00000588667 ZBTB37Q5TC79 503 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 FAM166AQ6J272 317 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 OR5H6Q8NGV6 325 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 CCL17Q92583 94 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 UQCC2Q9BRT2 126 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 PAPOLGQ9BWT3 736 aaKnown RBP17■□□□□ 0.31
ATG4D-208ENST00000588667 METTL17Q9H7H0 456 aaPredicted RBP17■□□□□ 0.31
ATG4D-208ENST00000588667 PPP1R3CQ9UQK1 317 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 RHBDD3Q9Y3P4 386 aa17■□□□□ 0.31
ATG4D-208ENST00000588667 VGLL3A8MV65 326 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 SMAD7O15105 426 aaKnown RBP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 CST4P01036 141 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 ALDOBP05062 364 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 USF1P22415 310 aaPredicted RBP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 PTBP1P26599 531 aaKnown RBP eCLIP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 GATA4P43694 442 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 MZT1Q08AG7 82 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 MAB21L1Q13394 359 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 UBE2NLQ5JXB2 153 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 C1orf100Q5SVJ3 147 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 OR52N4Q8NGI2 321 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 DVL3Q92997 716 aaPredicted RBP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 NEK6Q9HC98 313 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 GCM1Q9NP62 436 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 OR5V1Q9UGF6 321 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.99■□□□□ 0.319e-7■■■□□ 18.2
ATG4D-208ENST00000588667 ZNF816-ZNF321PA0A0X1KG74 233 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 PPIHO43447 177 aaKnown RBP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 EIF4EP06730 217 aaKnown RBP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 HCKP08631 526 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 ZNF93P35789 620 aaPredicted RBP16.99■□□□□ 0.31
ATG4D-208ENST00000588667 KRT74Q7RTS7 529 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 OR8S1Q8NH09 359 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 TMEM106BQ9NUM4 274 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 TREM2Q9NZC2 230 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 EXTL2Q9UBQ6 330 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 MPC1Q9Y5U8 109 aa16.99■□□□□ 0.31
ATG4D-208ENST00000588667 IFNL4K9M1U5 179 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 PTBP3O95758 552 aaKnown RBP16.98■□□□□ 0.31
ATG4D-208ENST00000588667 P2RY14Q15391 338 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 CLVS2Q5SYC1 327 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 LYPD6Q86Y78 171 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 MAPK1IP1LQ8NDC0 245 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 ERGIC1Q969X5 290 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 FAM3DQ96BQ1 224 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 CCDC32Q9BV29 185 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 C14orf119Q9NWQ9 140 aa16.98■□□□□ 0.31
ATG4D-208ENST00000588667 IGHV4-61A0A0C4DH41 118 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 IGKV1-9A0A0C4DH69 117 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 LOC100289279A0A1B0GTE1 492 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 PRDX4Q13162 271 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 CNN3Q15417 329 aaKnown RBP16.97■□□□□ 0.31
ATG4D-208ENST00000588667 SPSB1Q96BD6 273 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 TIMD4Q96H15 378 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 TECTBQ96PL2 329 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 ABCA2Q9BZC7 2435 aa16.97■□□□□ 0.31
ATG4D-208ENST00000588667 IGHV3-64DA0A0J9YX35 117 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 ZNF850A8MQ14 1090 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 ARSBP15848 533 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 POU3F4P49335 361 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 IL18Q14116 193 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 UBE2V2Q15819 145 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 ZNF79Q15937 498 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 ZNF181Q2M3W8 571 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 TMEM42Q69YG0 159 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 MOGAT3Q86VF5 341 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 GDPD1Q8N9F7 314 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 OR51D1Q8NGF3 324 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 RAB40AQ8WXH6 277 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 PIGCQ92535 297 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 RAB1CQ92928 201 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 SLC25A28Q96A46 364 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 ITPKCQ96DU7 683 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 CPNE2Q96FN4 548 aaPredicted RBP16.96■□□□□ 0.31
ATG4D-208ENST00000588667 SOSTQ9BQB4 213 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 SRRQ9GZT4 340 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 PPP1R3EQ9H7J1 279 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 CNTD2Q9H8S5 307 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 DCAF16Q9NXF7 216 aa16.96■□□□□ 0.31
ATG4D-208ENST00000588667 NRASP01111 189 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 PRKACBP22694 351 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 AZGP1P25311 298 aaKnown RBP16.96■□□□□ 0.3
ATG4D-208ENST00000588667 C2orf76Q3KRA6 126 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 PRAMEF6Q5VXH4 476 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 BAIAP2L2Q6UXY1 529 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 PEG10Q86TG7 708 aaKnown RBP16.96■□□□□ 0.3
ATG4D-208ENST00000588667 BIVMQ86UB2 503 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 ZDHHC23Q8IYP9 409 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 OR4M1Q8NGD0 313 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 Q8TCH9 128 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 GPER1Q99527 375 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 MICU1Q9BPX6 476 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 ABCG5Q9H222 651 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 FN3KRPQ9HA64 309 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 RABL2AQ9UBK7 228 aaPredicted RBP16.96■□□□□ 0.3
ATG4D-208ENST00000588667 RABL2BQ9UNT1 228 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 WIPI2Q9Y4P8 454 aa16.96■□□□□ 0.3
ATG4D-208ENST00000588667 LRRC30A6NM36 301 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms