RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ALKBH1Q13686 389 aaKnown RBP19.68■□□□□ 0.74
SHMT1-206ENST00000579558 KLHL22Q53GT1 634 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 CD177Q8N6Q3 437 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 BORCS8Q96FH0 119 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 ISG20L2Q9H9L3 353 aaKnown RBP19.68■□□□□ 0.74
SHMT1-206ENST00000579558 C8orf4Q9NR00 106 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 MRPS18AQ9NVS2 196 aaKnown RBP19.68■□□□□ 0.74
SHMT1-206ENST00000579558 HHLA2Q9UM44 414 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 IGKV1-27A0A075B6S5 117 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 A0A1W2PQ09 198 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 TMEM89A2RUT3 159 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 WBP4O75554 376 aaKnown RBP19.67■□□□□ 0.74
SHMT1-206ENST00000579558 PEX2P28328 305 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 PRDX2P32119 198 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 SLC9A3R2Q15599 337 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 PDZD9Q8IXQ8 264 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 PACRGLQ8N7B6 248 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 ZNF676Q8N7Q3 588 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 CYGBQ8WWM9 190 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 FGGYQ96C11 551 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 HES4Q9HCC6 221 aa19.67■□□□□ 0.74
SHMT1-206ENST00000579558 OR4C45A6NMZ5 311 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 SLC1A7O00341 560 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 CLIC3O95833 236 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 CEBPDP49716 269 aaPredicted RBP19.66■□□□□ 0.74
SHMT1-206ENST00000579558 ERVK11-1P61568 191 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 SMN1Q16637 294 aaKnown RBP19.66■□□□□ 0.74
SHMT1-206ENST00000579558 ZNF691Q5VV52 312 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 EGFL6Q8IUX8 553 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 ZNF561Q8N587 486 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 OR13C3Q8NGS6 347 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 OR10AC1Q8NH08 325 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 SLC25A28Q96A46 364 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 ZNF649Q9BS31 505 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 SIRT7Q9NRC8 400 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 OR14J1Q9UGF5 321 aa19.66■□□□□ 0.74
SHMT1-206ENST00000579558 ANK2Q01484 3957 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 ANKRD65E5RJM6 399 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 CLDN34H7C241 214 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 HAX1O00165 279 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 RNASE1P07998 156 aaKnown RBP19.65■□□□□ 0.74
SHMT1-206ENST00000579558 ATF1P18846 271 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 COMPP49747 757 aaPredicted RBP19.65■□□□□ 0.74
SHMT1-206ENST00000579558 MRPL28Q13084 256 aaKnown RBP19.65■□□□□ 0.74
SHMT1-206ENST00000579558 TTC23Q5W5X9 447 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 SLC25A26Q70HW3 274 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 UTS2BQ765I0 119 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 Q8N7P7 452 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 DNAAF1Q8NEP3 725 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 OR51A4Q8NGJ6 313 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 CNIH3Q8TBE1 160 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 SLAMF9Q96A28 289 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 CEP19Q96LK0 163 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 PRDM13Q9H4Q3 707 aa19.65■□□□□ 0.74
SHMT1-206ENST00000579558 TRBV23-1A0A0A0MS06 115 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 IGKV1-9A0A0C4DH69 117 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 HOXA3O43365 443 aaPredicted RBP19.64■□□□□ 0.73
SHMT1-206ENST00000579558 INMTO95050 263 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 KNG1P01042 644 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 PRKACBP22694 351 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 RBP2P50120 134 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 GBX2P52951 348 aaPredicted RBP19.64■□□□□ 0.73
SHMT1-206ENST00000579558 ATP1B3P54709 279 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 FAM185AQ8N0U4 392 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 FGF20Q9NP95 211 aaPredicted RBP19.64■□□□□ 0.73
SHMT1-206ENST00000579558 NOX4Q9NPH5 578 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 MTCH1Q9NZJ7 389 aa19.64■□□□□ 0.73
SHMT1-206ENST00000579558 E9PI62 339 aa19.63■□□□□ 0.73
SHMT1-206ENST00000579558 M0R1W7 72 aa19.63■□□□□ 0.73
SHMT1-206ENST00000579558 OCM2P0CE71 109 aa19.63■□□□□ 0.73
SHMT1-206ENST00000579558 OCMP0CE72 109 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-206ENST00000579558 AZGP1P25311 298 aaKnown RBP19.63■□□□□ 0.73
SHMT1-206ENST00000579558 PRB3Q04118 309 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-206ENST00000579558 BLMHQ13867 455 aa19.63■□□□□ 0.73
SHMT1-206ENST00000579558 METAP1DQ6UB28 335 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-206ENST00000579558 DHRSXQ8N5I4 330 aa19.63■□□□□ 0.73
SHMT1-206ENST00000579558 SETD9Q8NE22 299 aa19.63■□□□□ 0.73
SHMT1-206ENST00000579558 F8VVB4 439 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 F8VWA3 439 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 CCDC159P0C7I6 412 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 LIMS3P0CW19 117 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 LIMS4P0CW20 117 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 HKR1P10072 659 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 POU3F4P49335 361 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 DLX1P56177 255 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 MTCP1P56278 107 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 Q6YL49 198 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 C1orf122Q6ZSJ8 110 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 LHFPL2Q6ZUX7 228 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 OR5AK2Q8NH90 309 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 SPSB1Q96BD6 273 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 JAM3Q9BX67 310 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 COMMD4Q9H0A8 199 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 C19orf12Q9NSK7 152 aa19.62■□□□□ 0.73
SHMT1-206ENST00000579558 IRGMA1A4Y4 181 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 TMEM212A6NML5 194 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 ZFPL1O95159 310 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 CYB5AP00167 134 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 RPSAP08865 295 aaKnown RBP19.61■□□□□ 0.73
SHMT1-206ENST00000579558 ADARB1P78563 741 aaKnown RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms