RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 POLDIP2Q9Y2S7 368 aa12.39□□□□□ -0.43
VPS39-210ENST00000568357 TRIM77I1YAP6 450 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 NXPH2O95156 264 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 NDUFB7P17568 137 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 PRDX2P32119 198 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 CEBPDP49716 269 aaPredicted RBP12.38□□□□□ -0.43
VPS39-210ENST00000568357 IL24Q13007 206 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 SMIM21Q3B7S5 101 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 RUSC1-AS1Q66K80 236 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 RBMS3Q6XE24 437 aaKnown RBP12.38□□□□□ -0.43
VPS39-210ENST00000568357 ZNF676Q8N7Q3 588 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 C8orf46Q8TAG6 207 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 FAM216AQ8WUB2 273 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 PP6455Q8WZ26 134 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 H1FXQ92522 213 aaKnown RBP12.38□□□□□ -0.43
VPS39-210ENST00000568357 DUX5Q96PT3 197 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 MYCBPQ99417 103 aaPredicted RBP12.38□□□□□ -0.43
VPS39-210ENST00000568357 JAM3Q9BX67 310 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 ELL3Q9HB65 397 aaPredicted RBP12.38□□□□□ -0.43
VPS39-210ENST00000568357 NKX1-2Q9UD57 310 aaPredicted RBP12.38□□□□□ -0.43
VPS39-210ENST00000568357 HHLA2Q9UM44 414 aa12.38□□□□□ -0.43
VPS39-210ENST00000568357 MDFIC2A0A1B0GVS7 189 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 INMTO95050 263 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 ZFPL1O95159 310 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 GNAO1P09471 354 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 ATF1P18846 271 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 ETV1P50549 477 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 GTF2A1P52655 376 aaPredicted RBP12.37□□□□□ -0.43
VPS39-210ENST00000568357 CAV3P56539 151 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 UBA52P62987 128 aaKnown RBP12.37□□□□□ -0.43
VPS39-210ENST00000568357 BAMBIQ13145 260 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 GPR157Q5UAW9 335 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 UTS2BQ765I0 119 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 RNF144BQ7Z419 303 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 Q8N7P7 452 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 TMEM185AQ8NFB2 350 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 LHX4Q969G2 390 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 BORCS8Q96FH0 119 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 DMRTB1Q96MA1 342 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 ONECUT1Q9UBC0 465 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 KPTNQ9Y664 436 aa12.37□□□□□ -0.43
VPS39-210ENST00000568357 DOCK11Q5JSL3 2073 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 DNAJC9-AS1A6NH13 148 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 ZNF20P17024 532 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 DCKP27707 260 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 RBP2P50120 134 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 GBX2P52951 348 aaPredicted RBP12.36□□□□□ -0.43
VPS39-210ENST00000568357 DLX1P56177 255 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 MTCP1P56278 107 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 BPIFB3P59826 476 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 PRB3Q04118 309 aaPredicted RBP12.36□□□□□ -0.43
VPS39-210ENST00000568357 IL18R1Q13478 541 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 PDCD1Q15116 288 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 CNN3Q15417 329 aaKnown RBP12.36□□□□□ -0.43
VPS39-210ENST00000568357 DEFB112Q30KQ8 113 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 OR2G6Q5TZ20 316 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 XAF1Q6GPH4 301 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 LAIR2Q6ISS4 152 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 SLC25A26Q70HW3 274 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 VMO1Q7Z5L0 202 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 PDZD9Q8IXQ8 264 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 DNAAF1Q8NEP3 725 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 OR13C3Q8NGS6 347 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 SLAMF9Q96A28 289 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 PDCD1LG2Q9BQ51 273 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 PRDM13Q9H4Q3 707 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 DCLRE1BQ9H816 532 aa12.36□□□□□ -0.43
VPS39-210ENST00000568357 IGHV1-69DA0A0B4J2H0 117 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 H0YAE9 185 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 IGHV1-69P01742 117 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 PRTN3P24158 256 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 AZGP1P25311 298 aaKnown RBP12.35□□□□□ -0.43
VPS39-210ENST00000568357 CAPGP40121 348 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 CAPZA1P52907 286 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 ATP1B3P54709 279 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 GABPB1Q06547 395 aaPredicted RBP12.35□□□□□ -0.43
VPS39-210ENST00000568357 MRPL28Q13084 256 aaKnown RBP12.35□□□□□ -0.43
VPS39-210ENST00000568357 SLC9A3R2Q15599 337 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 C12orf54Q6X4T0 127 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 ZNF561Q8N587 486 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 SETD9Q8NE22 299 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 OR5AK2Q8NH90 309 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 GGHQ92820 318 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 CEP19Q96LK0 163 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 OR14J1Q9UGF5 321 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 CLEC2DQ9UHP7 191 aa12.35□□□□□ -0.43
VPS39-210ENST00000568357 DIMT1Q9UNQ2 313 aaKnown RBP12.35□□□□□ -0.43
VPS39-210ENST00000568357 TENM1Q9UKZ4 2725 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 TGP01266 2768 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 TRBV2A0A0J9YWF9 115 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 TMEM212A6NML5 194 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 SLC1A7O00341 560 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 KNG1P01042 644 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 PRKACBP22694 351 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 NPBWR2P48146 333 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 CRIP3Q6Q6R5 217 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 C1orf122Q6ZSJ8 110 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 CMTM4Q8IZR5 234 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 PIP4P2Q8N4L2 257 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 KIR3DL3Q8N743 410 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms