RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MYEF2Q9P2K5 600 aaKnown RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 CLN8Q9UBY8 286 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 HMGXB4Q9UGU5 601 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 RWDD2AQ9UIY3 292 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 ENPP5Q9UJA9 477 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 KPTNQ9Y664 436 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 DOCK6Q96HP0 2047 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 POLR3AO14802 1390 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 JCADQ9P266 1359 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 LTBP2Q14767 1821 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 BRCA1P38398 1863 aaKnown RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 FHOD3Q2V2M9 1422 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 IGHV3OR16-9A0A0B4J2B5 98 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 A0A1B0GW15 77 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 A0A1W2PRD5 423 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 M0R3G1 203 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 NDUFAB1O14561 156 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 RFXANKO14593 260 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 TOR1AO14656 332 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ITGB1BP1O14713 200 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ZW10O43264 779 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 OR7C2O60412 319 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CCDC22O60826 627 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 FCN3O75636 299 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 MYO1DO94832 1006 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CCNB2O95067 398 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 VAPBO95292 243 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 BRI3O95415 125 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ETHE1O95571 254 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 FSTL3O95633 263 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 LSM8O95777 96 aaKnown RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 CST4P01036 141 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 IFNW1P05000 195 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CD82P27701 267 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 PSMB6P28072 239 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 HOXA6P31267 233 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 MYCNOSP40205 109 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 P2RY2P41231 377 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CSKP41240 450 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 GPR1P46091 355 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 OR2B6P58173 313 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ZNF121P58317 390 aaPredicted RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 SLAMF1Q13291 335 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ITGB3BPQ13352 177 aaPredicted RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 PMS2P3Q13401 168 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 MAPRE2Q15555 327 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 BCL2A1Q16548 175 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 C6orf99Q4VX62 202 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CDKL4Q5MAI5 379 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ULK3Q6PHR2 472 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 TPGS1Q6ZTW0 290 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 PID1Q7Z2X4 250 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 FAM122BQ7Z309 247 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 MDP1Q86V88 176 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 LRRC6Q86X45 466 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 PLCZ1Q86YW0 608 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 APRG1Q8IVJ8 170 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ARHGAP18Q8N392 663 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 C17orf78Q8N4C9 275 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 RNF10Q8N5U6 811 aaKnown RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 CYB561A3Q8NBI2 242 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 INO80EQ8NBZ0 244 aaPredicted RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 C19orf18Q8NEA5 215 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 OR8J2Q8NGG1 315 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 OR56A4Q8NGH8 313 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 OR4D6Q8NGJ1 314 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 MUC7Q8TAX7 377 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 TCP10LQ8TDR4 215 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 GTF2H4Q92759 462 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CDS1Q92903 461 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 FAM131CQ96AQ9 280 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 RPEQ96AT9 228 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CCDC124Q96CT7 223 aaKnown RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 CPB2Q96IY4 423 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 C9orf72Q96LT7 481 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 XPO6Q96QU8 1125 aaKnown RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 NAPGQ99747 312 aaPredicted RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 MAP1LC3CQ9BXW4 147 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 POTEKPQ9BYX7 375 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 SHCBP1LQ9BZQ2 653 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 UCK2Q9BZX2 261 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 LRRC19Q9H756 370 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 TMEM165Q9HC07 324 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 CD209Q9NNX6 404 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 ZC4H2Q9NQZ6 224 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 NLE1Q9NVX2 485 aaPredicted RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 STMN3Q9NZ72 180 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 EMC3Q9P0I2 261 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 MRM2Q9UI43 246 aaKnown RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 DDX19BQ9UMR2 479 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 SCML1Q9UN30 329 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 PSMD13Q9UNM6 376 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 PUS1Q9Y606 427 aaKnown RBP eCLIP0.93□□□□□ -2.26
VPS35-207ENST00000568191 ADCY9O60503 1353 aa0.93□□□□□ -2.26
VPS35-207ENST00000568191 COL22A1Q8NFW1 1626 aaPredicted RBP0.93□□□□□ -2.26
VPS35-207ENST00000568191 AQRO60306 1485 aaKnown RBP eCLIP0.92□□□□□ -2.26
VPS35-207ENST00000568191 MROH7Q68CQ1 1323 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 A0A0A6YYD5 115 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 MGAT4DA6NG13 374 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 CENPXA8MT69 81 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms