RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 LINC01006Q8NI28 216 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 TRMT10AQ8TBZ6 339 aaKnown RBP18.37■□□□□ 0.53
CLN3-215ENST00000565236 OR14J1Q9UGF5 321 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 VPREB3Q9UKI3 123 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 ANGPTL7O43827 346 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 TMEM200BQ69YZ2 307 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 DHRS7BQ6IAN0 325 aaPredicted RBP18.36■□□□□ 0.53
CLN3-215ENST00000565236 CALHM1Q8IU99 346 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 ZSCAN4Q8NAM6 433 aaPredicted RBP18.36■□□□□ 0.53
CLN3-215ENST00000565236 CCDC54Q8NEL0 328 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 OR5R1Q8NH85 324 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 TRUB1Q8WWH5 349 aaKnown RBP18.36■□□□□ 0.53
CLN3-215ENST00000565236 PYDC1Q8WXC3 89 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 PKIBQ9C010 78 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 IMPAD1Q9NX62 359 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 ORC6Q9Y5N6 252 aa18.36■□□□□ 0.53
CLN3-215ENST00000565236 hCG_1809904A0A1W2PP81 198 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 A0A1W2PPE2 198 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 A0A1W2PR64 198 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 A0A1W2PRV1 198 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 SERPINA3P01011 423 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 IL24Q13007 206 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 MIDNQ504T8 468 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 FAM220AQ7Z4H9 259 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 OR4M1Q8NGD0 313 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 CITED1Q99966 193 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 HEXA-AS1Q9H8Q6 139 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 HES4Q9HCC6 221 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 GNG8Q9UK08 70 aa18.35■□□□□ 0.53
CLN3-215ENST00000565236 GATBO75879 557 aaKnown RBP18.34■□□□□ 0.53
CLN3-215ENST00000565236 TK1P04183 234 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 TGFBR2P37173 567 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 FUT6P51993 359 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 ERVK11-1P61568 191 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 UBE2V2Q15819 145 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 HCP5Q6MZN7 132 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 Q6ZSV7 163 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 MKXQ8IYA7 352 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 PRSS35Q8N3Z0 413 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 BEND2Q8NDZ0 799 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 UBE2FQ969M7 185 aa18.34■□□□□ 0.53
CLN3-215ENST00000565236 TP53I3Q53FA7 332 aa18.33■□□□□ 0.52
CLN3-215ENST00000565236 FAM234AQ9H0X4 552 aa18.33■□□□□ 0.52
CLN3-215ENST00000565236 C16orf95Q9H693 158 aa18.33■□□□□ 0.52
CLN3-215ENST00000565236 USE1Q9NZ43 259 aa18.33■□□□□ 0.52
CLN3-215ENST00000565236 CLPXO76031 633 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 ALPLP05186 524 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 UBCP0CG48 685 aaKnown RBP18.32■□□□□ 0.52
CLN3-215ENST00000565236 ZNF85Q03923 595 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 KCTD20Q7Z5Y7 419 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 ASCC1Q8N9N2 400 aaKnown RBP18.32■□□□□ 0.52
CLN3-215ENST00000565236 C10orf35Q96D05 121 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 BORCS8Q96FH0 119 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 HRASLS5Q96KN8 279 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 CEP19Q96LK0 163 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 SSX3Q99909 188 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 CHST5Q9GZS9 411 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 MTCH1Q9NZJ7 389 aa18.32■□□□□ 0.52
CLN3-215ENST00000565236 LOC107986453A0A1B0GWG9 222 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 K7N7A8 449 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 TIMM23O14925 209 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 WIPF1O43516 503 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 ENTPD6O75354 484 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 INMTO95050 263 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 CHRM2P08172 466 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 PIPP12273 146 aaPredicted RBP18.31■□□□□ 0.52
CLN3-215ENST00000565236 CCL3L1P16619 93 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 PROK1P58294 105 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 KRTAP10-3P60369 221 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 COL10A1Q03692 680 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 RDH10Q8IZV5 341 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 C11orf42Q8N5U0 333 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 C17orf50Q8WW18 174 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 PP6455Q8WZ26 134 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 SLAMF9Q96A28 289 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 RNFT2Q96EX2 444 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 PPA2Q9H2U2 334 aa18.31■□□□□ 0.52
CLN3-215ENST00000565236 IGKV1-27A0A075B6S5 117 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 DAPL1A0PJW8 107 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 H3BUX3 64 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 M0QZ24 198 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 EI24O14681 340 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 TSPAN9O75954 239 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 KIR3DL2P43630 455 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 LGALS4P56470 323 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 ERVFRD-1P60508 538 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 ISL1P61371 349 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 SNRPGP62308 76 aaKnown RBP18.3■□□□□ 0.52
CLN3-215ENST00000565236 ACTC1P68032 377 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 ACTA1P68133 377 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 KPNB1Q14974 876 aaKnown RBP18.3■□□□□ 0.52
CLN3-215ENST00000565236 CNN3Q15417 329 aaKnown RBP18.3■□□□□ 0.52
CLN3-215ENST00000565236 ZIK1Q3SY52 487 aaPredicted RBP18.3■□□□□ 0.52
CLN3-215ENST00000565236 SLC25A30Q5SVS4 291 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 TMEM244Q5VVB8 128 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 MEDAGQ5VYS4 303 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 ZFP1Q6P2D0 407 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 SLC25A26Q70HW3 274 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 EGFL6Q8IUX8 553 aa18.3■□□□□ 0.52
CLN3-215ENST00000565236 MEGF9Q9H1U4 602 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms