RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 STEAP1Q9UHE8 339 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 ING4Q9UNL4 249 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 LRBAP50851 2863 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 FBN2P35556 2912 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 CELSR2Q9HCU4 2923 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 IGKV1-12A0A0C4DH73 117 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 CLDN25C9JDP6 229 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 LYNX1G3V0Z9 82 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 ANGPTL7O43827 346 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 SSX4O60224 188 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 FSTL3O95633 263 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 CYB5R3P00387 301 aaPredicted RBP17.36■□□□□ 0.37
CLN3-212ENST00000564574 IGKV1D-12P01611 117 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 LYNX1P0DP58 116 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 BMXP51813 675 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 TMEM33P57088 247 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 DSCR9P59020 149 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 ERVK11-1P61568 191 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 SPCS2Q15005 226 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 GLIPR1L1Q6UWM5 242 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 PEG10Q86TG7 708 aaKnown RBP17.36■□□□□ 0.37
CLN3-212ENST00000564574 SLC25A46Q96AG3 418 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 NKX3-1Q99801 234 aaPredicted RBP17.36■□□□□ 0.37
CLN3-212ENST00000564574 NRIP2Q9BQI9 281 aa17.36■□□□□ 0.37
CLN3-212ENST00000564574 ARID1AO14497 2285 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 SMIM30A4D0T7 59 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 A6NHS1 94 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 AKR7A2O43488 359 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 BPNT1O95861 308 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 GLRA1P23415 457 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 RSU1Q15404 277 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 HES5Q5TA89 166 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 C1QL2Q7Z5L3 287 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 FAM90A1Q86YD7 464 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 TGIF2LYQ8IUE0 185 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 Q8NFD4 153 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 SLC25A28Q96A46 364 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 TIMD4Q96H15 378 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 MRI1Q9BV20 369 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 HES4Q9HCC6 221 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 ABCA12Q86UK0 2595 aa17.35■□□□□ 0.37
CLN3-212ENST00000564574 ANKRD17O75179 2603 aaKnown RBP17.34■□□□□ 0.37
CLN3-212ENST00000564574 NDUFS8O00217 210 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 CSTBP04080 98 aaKnown RBP17.34■□□□□ 0.37
CLN3-212ENST00000564574 BCL3P20749 454 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 RORCP51449 518 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 CAV3P56539 151 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 CENPEQ02224 2701 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 HNRNPA0Q13151 305 aaKnown RBP17.34■□□□□ 0.37
CLN3-212ENST00000564574 DGUOKQ16854 277 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 ELP2Q6IA86 826 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 CLEC2AQ6UVW9 174 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 ZNF525Q8N782 197 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 RAB1CQ92928 201 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 ELL3Q9HB65 397 aaPredicted RBP17.34■□□□□ 0.37
CLN3-212ENST00000564574 DCAF16Q9NXF7 216 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 DAPK2Q9UIK4 370 aa17.34■□□□□ 0.37
CLN3-212ENST00000564574 ITPR2Q14571 2701 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 PPIAL4EA0A075B759 164 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 PPIAL4DF5H284 164 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 LGALS8O00214 317 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 NXPH2O95156 264 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 PPIAL4FP0DN26 164 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 ARSBP15848 533 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 EGR1P18146 543 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 GIFP27352 417 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 CARTPTQ16568 116 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 SMIM21Q3B7S5 101 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 TEX36Q5VZQ5 186 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 FIP1L1Q6UN15 594 aaKnown RBP17.33■□□□□ 0.36
CLN3-212ENST00000564574 ACP7Q6ZNF0 438 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 FAM58AQ8N1B3 248 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 EMG1Q92979 244 aaKnown RBP17.33■□□□□ 0.36
CLN3-212ENST00000564574 FAM3DQ96BQ1 224 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 MRPS24Q96EL2 167 aaKnown RBP17.33■□□□□ 0.36
CLN3-212ENST00000564574 C1orf147Q96MC9 270 aaPredicted RBP17.33■□□□□ 0.36
CLN3-212ENST00000564574 ZNF488Q96MN9 340 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 CST11Q9H112 138 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 PPIAL4AQ9Y536 164 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 MYO9AB2RTY4 2548 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 APCP25054 2843 aa17.33■□□□□ 0.36
CLN3-212ENST00000564574 TRAV38-1A0A0B4J264 116 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 OOEPA6NGQ2 149 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 HTR3BO95264 441 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 SFTPBP07988 381 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 CALCBP10092 127 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 SLC2A2P11168 524 aaPredicted RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 MUC1P15941 1255 aaPredicted RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 CD80P33681 288 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 SOX6P35712 828 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 GPR6P46095 362 aaPredicted RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 NPBWR2P48146 333 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 SCAND1P57086 179 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 BTG1P62324 171 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 P2RY14Q15391 338 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 IDNKQ5T6J7 187 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 PRSS57Q6UWY2 283 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 OR2W3Q7Z3T1 314 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 BOLLQ8N9W6 283 aaKnown RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 KCNG3Q8TAE7 436 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms