RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 OPN1MW2P0DN77 364 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 OPN1MW3P0DN78 364 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 RPL31P62899 125 aaKnown RBP15.44■□□□□ 0.06
VPS35-202ENST00000561713 PLA1AQ53H76 456 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 SAMD5Q5TGI4 173 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 TMEM42Q69YG0 159 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 ANGPTL5Q86XS5 388 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 CALHM1Q8IU99 346 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 BEND2Q8NDZ0 799 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 CIB1Q99828 191 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 NRIP2Q9BQI9 281 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 GABARAPL1Q9H0R8 117 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 H2AFY2Q9P0M6 372 aaPredicted RBP15.44■□□□□ 0.06
VPS35-202ENST00000561713 G3V2T6 193 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 SLC1A7O00341 560 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 DYNC1I1O14576 645 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 PIN1P1O15428 100 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 PRDX2P32119 198 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 POLR2IP36954 125 aaKnown RBP15.43■□□□□ 0.06
VPS35-202ENST00000561713 ACSM1Q08AH1 577 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 FAM189A2Q15884 450 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 KDM4DQ6B0I6 523 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 C1orf122Q6ZSJ8 110 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 YIPF7Q8N8F6 280 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 OR5D13Q8NGL4 314 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 OR5R1Q8NH85 324 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 PPP1R35Q8TAP8 253 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 SSX3Q99909 188 aa15.43■□□□□ 0.06
VPS35-202ENST00000561713 FAM230AA0A1W2PPH8 454 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 F8VVB4 439 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 F8VWA3 439 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 GABRA5P31644 462 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 EFNB1P98172 346 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 HERPUD1Q15011 391 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 TMEM200BQ69YZ2 307 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 Q6ZTK2 550 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 ZNF573Q86YE8 665 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 GID4Q8IVV7 300 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 C11orf44Q8N8P7 122 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 ASCC1Q8N9N2 400 aaKnown RBP15.42■□□□□ 0.06
VPS35-202ENST00000561713 OR10H4Q8NGA5 316 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 RIBC2Q9H4K1 309 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 PLEKHA1Q9HB21 404 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 RASL12Q9NYN1 266 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 FBLN5Q9UBX5 448 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 POLDIP2Q9Y2S7 368 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 SF3B6Q9Y3B4 125 aaKnown RBP15.42■□□□□ 0.06
VPS35-202ENST00000561713 SNX5Q9Y5X3 404 aa15.42■□□□□ 0.06
VPS35-202ENST00000561713 KIAA2026Q5HYC2 2103 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 IGKV1-27A0A075B6S5 117 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 A0A1W2PQL4 384 aaPredicted RBP15.41■□□□□ 0.06
VPS35-202ENST00000561713 DLGAP1O14490 977 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 CHST1O43916 411 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 KRT8P05787 483 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 FASP25445 335 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 BNIP1Q12981 228 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 LRRC75BQ2VPJ9 315 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 C1orf146Q5VVC0 180 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 LHFPL4Q7Z7J7 247 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 ZDHHC13Q8IUH4 622 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 ZNF561Q8N587 486 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 C11orf42Q8N5U0 333 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 OR2T27Q8NH04 317 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 SLAMF9Q96A28 289 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 HES4Q9HCC6 221 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 IL36RNQ9UBH0 155 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 FOXJ3Q9UPW0 622 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 PLXNB1O43157 2135 aa15.41■□□□□ 0.06
VPS35-202ENST00000561713 RYR3Q15413 4870 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 SAC3D1A6NKF1 404 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 CCL1P22362 96 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 MPZP25189 248 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 COL10A1Q03692 680 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 CATSPERDQ86XM0 798 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 MNTQ99583 582 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 FAM53CQ9NYF3 392 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 USE1Q9NZ43 259 aa15.4■□□□□ 0.06
VPS35-202ENST00000561713 LOC107986453A0A1B0GWG9 222 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 MEGF11A6BM72 1044 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 SYT7O43581 403 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 NOS1APO75052 506 aaPredicted RBP15.39■□□□□ 0.05
VPS35-202ENST00000561713 TK1P04183 234 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 UBE2V2Q15819 145 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 TP53I3Q53FA7 332 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 DYNAPQ8N1N2 210 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 NKX3-1Q99801 234 aaPredicted RBP15.39■□□□□ 0.05
VPS35-202ENST00000561713 OAZ3Q9UMX2 235 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 AP4S1Q9Y587 144 aa15.39■□□□□ 0.05
VPS35-202ENST00000561713 HTR1FP30939 366 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 KIR3DL2P43630 455 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 EFNB2P52799 333 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 DLX6P56179 175 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 EDDM3BP56851 147 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 ACTR3P61158 418 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 ERVK11-1P61568 191 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 EDDM3AQ14507 147 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 Q6ZSR3 168 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 TCF23Q7RTU1 214 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 REC114Q7Z4M0 266 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 PRSS35Q8N3Z0 413 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms