RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ATP6V1E1P36543 226 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 TGFBR2P37173 567 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 RASSF2P50749 326 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 UBE2V2Q15819 145 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 MIDNQ504T8 468 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 SLC35E4Q6ICL7 350 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 CATSPERDQ86XM0 798 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 RDH10Q8IZV5 341 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 ZNF561Q8N587 486 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 C11orf42Q8N5U0 333 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 BEND2Q8NDZ0 799 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 UBE2FQ969M7 185 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 AJUBAQ96IF1 538 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 SSX3Q99909 188 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 RBM4BQ9BQ04 359 aaKnown RBP8.33□□□□□ -1.08
LDLR-214ENST00000560628 ADI1Q9BV57 179 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 GABARAPL1Q9H0R8 117 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 C16orf95Q9H693 158 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 WARS2Q9UGM6 360 aaKnown RBP8.33□□□□□ -1.08
LDLR-214ENST00000560628 OAZ3Q9UMX2 235 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 POLDIP2Q9Y2S7 368 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 SIGLEC9Q9Y336 463 aa8.33□□□□□ -1.08
LDLR-214ENST00000560628 F8VVB4 439 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 F8VWA3 439 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 TIMM23O14925 209 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 SYT7O43581 403 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 ATP5HO75947 161 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 TSPAN9O75954 239 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 TK1P04183 234 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 FCGR1AP12314 374 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 BMXP51813 675 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 COL10A1Q03692 680 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 ZNF273Q14593 569 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 TP53I3Q53FA7 332 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 HIST2H2BDQ6DRA6 164 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 ZNF782Q6ZMW2 699 aaPredicted RBP8.32□□□□□ -1.08
LDLR-214ENST00000560628 Q6ZSR3 168 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 OR5R1Q8NH85 324 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 PPP1R35Q8TAP8 253 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 SLAMF9Q96A28 289 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 EME1Q96AY2 570 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 CENPNQ96H22 339 aaPredicted RBP8.32□□□□□ -1.08
LDLR-214ENST00000560628 HEXA-AS1Q9H8Q6 139 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 HES4Q9HCC6 221 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 ENOPH1Q9UHY7 261 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 SLC7A11Q9UPY5 501 aa8.32□□□□□ -1.08
LDLR-214ENST00000560628 WNK1Q9H4A3 2382 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 IGKV1-27A0A075B6S5 117 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 A0A1W2PPH5 198 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 SULT1C4O75897 302 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 CCL1P22362 96 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 MPZP25189 248 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 LGALS4P56470 323 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 ERVK11-1P61568 191 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 ZNF85Q03923 595 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 IL24Q13007 206 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 EGFL6Q8IUX8 553 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 PRSS35Q8N3Z0 413 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 ASCC1Q8N9N2 400 aaKnown RBP8.31□□□□□ -1.08
LDLR-214ENST00000560628 FAM110DQ8TAY7 271 aaPredicted RBP8.31□□□□□ -1.08
LDLR-214ENST00000560628 CEP19Q96LK0 163 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 OSBPL10Q9BXB5 764 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 PKIBQ9C010 78 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 FAM234AQ9H0X4 552 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 MEGF9Q9H1U4 602 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 PLEKHA1Q9HB21 404 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 USE1Q9NZ43 259 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 MTCH1Q9NZJ7 389 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 GNG8Q9UK08 70 aa8.31□□□□□ -1.08
LDLR-214ENST00000560628 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.31□□□□□ -1.08
LDLR-214ENST00000560628 PKD1L1Q8TDX9 2849 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 hCG_1809904A0A1W2PP81 198 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 A0A1W2PPE2 198 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 A0A1W2PR64 198 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 A0A1W2PRV1 198 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 DHRS7CA6NNS2 312 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 K7N7A8 449 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 CIB2O75838 187 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 TSPAN15O95858 294 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 SERPINA3P01011 423 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 CHRM2P08172 466 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 CALCBP10092 127 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 DUSP1P28562 367 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 GABRA5P31644 462 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 KIR3DL2P43630 455 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 RAB13P51153 203 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 FUT6P51993 359 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 EDDM3BP56851 147 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 LRRC75BQ2VPJ9 315 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 ZIK1Q3SY52 487 aaPredicted RBP8.3□□□□□ -1.08
LDLR-214ENST00000560628 PDLIM3Q53GG5 364 aaPredicted RBP8.3□□□□□ -1.08
LDLR-214ENST00000560628 PLA1AQ53H76 456 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 SLC25A26Q70HW3 274 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 LHFPL4Q7Z7J7 247 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 OR8J1Q8NGP2 316 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 PYDC1Q8WXC3 89 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 RFKQ969G6 155 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 GABARAPL3Q9BY60 117 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 MMP27Q9H306 513 aa8.3□□□□□ -1.08
LDLR-214ENST00000560628 FBLN5Q9UBX5 448 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms