RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FAM189A2Q15884 450 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 TMEM155Q4W5P6 130 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 SPRNQ5BIV9 151 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 DMRTC1Q5HYR2 192 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 C1orf100Q5SVJ3 147 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 FAM27D1Q5T7N8 215 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 AWAT2Q6E213 333 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 ASPHD2Q6ICH7 369 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 ASCL4Q6XD76 172 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 ZNF826PQ6ZT77 177 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 LRRC28Q86X40 367 aaPredicted RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 CALHM1Q8IU99 346 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 CLVS1Q8IUQ0 354 aaPredicted RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 OR6M1Q8NGM8 313 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 RAB2BQ8WUD1 216 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 RFT1Q96AA3 541 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 C12orf43Q96C57 262 aaKnown RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 ORAI1Q96D31 301 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 POM121Q96HA1 1249 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 SPACA5Q96QH8 159 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 MRI1Q9BV20 369 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 FGF23Q9GZV9 251 aaPredicted RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 DNTTIP1Q9H147 329 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 SMURF1Q9HCE7 757 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 TREM2Q9NZC2 230 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 MIOXQ9UGB7 285 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 MRPS28Q9Y2Q9 187 aaKnown RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 AK6Q9Y3D8 172 aaKnown RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 OTOGQ6ZRI0 2925 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 KIAA2026Q5HYC2 2103 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 MALRD1Q5VYJ5 2156 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 ISPDA4D126 451 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 NKX6-3A6NJ46 265 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 NOTOA8MTQ0 251 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 SLC17A2O00624 439 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 AKR7A2O43488 359 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 SPRY1O43609 319 aaPredicted RBP7.76□□□□□ -1.17
LDLR-210ENST00000559340 SYNGR1O43759 233 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 KDM4BO94953 1096 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 CDRT1O95170 752 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 HTR3BO95264 441 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 BPNT1O95861 308 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 PLATP00750 562 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 KNG1P01042 644 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 IL1AP01583 271 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 SDC2P34741 201 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 NR4A2P43354 598 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 ZP1P60852 638 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 RAB11BQ15907 218 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 TEX36Q5VZQ5 186 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 ELP2Q6IA86 826 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 ACP7Q6ZNF0 438 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 DCDC5Q6ZRR9 648 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 DNM1P46Q6ZS02 220 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 USP43Q70EL4 1123 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 NLRC3Q7RTR2 1065 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 SLC36A1Q7Z2H8 476 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 FAM58AQ8N1B3 248 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 GCSAMQ8N6F7 178 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 PPP1R35Q8TAP8 253 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 TBC1D15Q8TC07 691 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 EMG1Q92979 244 aaKnown RBP7.76□□□□□ -1.17
LDLR-210ENST00000559340 SLAMF9Q96A28 289 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 RAB39BQ96DA2 213 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 MRPS24Q96EL2 167 aaKnown RBP7.76□□□□□ -1.17
LDLR-210ENST00000559340 MED30Q96HR3 178 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 NRIP2Q9BQI9 281 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 CENPOQ9BU64 300 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 CST11Q9H112 138 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 PPIL3Q9H2H8 161 aaKnown RBP7.76□□□□□ -1.17
LDLR-210ENST00000559340 CNTD2Q9H8S5 307 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 SEBOXQ9HB31 216 aaPredicted RBP7.76□□□□□ -1.17
LDLR-210ENST00000559340 IL36GQ9NZH8 169 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 WIPI2Q9Y4P8 454 aa7.76□□□□□ -1.17
LDLR-210ENST00000559340 FBN2P35556 2912 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 SMIM31A0A1B0GVY4 71 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 CCDC160A6NGH7 325 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 VWC2LB2RUY7 222 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 SH2D1BO14796 132 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 SLC22A1O15245 554 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 ANGPTL7O43827 346 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 RHBDL1O75783 438 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 GABARAPO95166 117 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 IGHV2-70P01814 119 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 CHRM2P08172 466 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 GTF2F2P13984 249 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 ADRA2CP18825 462 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 USF1P22415 310 aaPredicted RBP7.75□□□□□ -1.17
LDLR-210ENST00000559340 OR3A4PP47883 348 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 SERPINB10P48595 397 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 FGF12P61328 243 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 ERVK11-1P61568 191 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 LSM3P62310 102 aaKnown RBP7.75□□□□□ -1.17
LDLR-210ENST00000559340 BLMHQ13867 455 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 DGUOKQ16854 277 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 ZNF404Q494X3 552 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 SPIN3Q5JUX0 258 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 GLIPR1L1Q6UWM5 242 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 OR2W3Q7Z3T1 314 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 LINC00596Q86U02 117 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms