RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SHISA5Q8N114 240 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 PARP12Q9H0J9 701 aaKnown RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 HIPK2Q9H2X6 1198 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 FOXD3Q9UJU5 478 aaPredicted RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 SRPK3Q9UPE1 567 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 MRPS18CQ9Y3D5 142 aaKnown RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 COL5A1P20908 1838 aaPredicted RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 TMEM210A6NLX4 147 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 TMEM150CB9EJG8 249 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 RPLP1P05386 114 aaKnown RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 GABRA3P34903 492 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 RBMXP38159 391 aaKnown RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 EMDP50402 254 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 DUSP3P51452 185 aaPredicted RBP9.58□□□□□ -0.88
USP3-206ENST00000558157 QRFPP83859 136 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 SQSTM1Q13501 440 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 HYAL4Q2M3T9 481 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 SLC25A26Q70HW3 274 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 D2HGDHQ8N465 521 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 OR4D6Q8NGJ1 314 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 CDH20Q9HBT6 801 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 ASCL3Q9NQ33 180 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 SLC22A13Q9Y226 551 aa9.58□□□□□ -0.88
USP3-206ENST00000558157 H3BSH0 61 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 CLDN34H7C241 214 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 CDX4O14627 284 aaPredicted RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 TP53I11O14683 189 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OPN1MWP04001 364 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OPN1MW2P0DN77 364 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OPN1MW3P0DN78 364 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 CCKARP32238 428 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 MFGE8Q08431 387 aaPredicted RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 ZNF141Q15928 474 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 KMT5CQ86Y97 462 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OR13C3Q8NGS6 347 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OR5H2Q8NGV7 314 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OR1P1Q8NH06 330 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 DTD1Q8TEA8 209 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 NKD1Q969G9 470 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 TAAR8Q969N4 342 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 CCDC74BQ96LY2 380 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 LRFN3Q9BTN0 628 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ZNF346Q9UL40 294 aaKnown RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 DAPP1Q9UN19 280 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OSGIN2Q9Y236 505 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 B3GALT5Q9Y2C3 310 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 URGCP-MRPS24S4R325 110 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 IGHV5-10-1A0A0J9YXX1 117 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 PPP5D1E7EU14 171 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 H3BMH7 237 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 PNMTP11086 282 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 GNB3P16520 340 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 SERPINA2P20848 420 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 PPP1CCP36873 323 aaKnown RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 APOBEC1P41238 236 aaKnown RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 HSD17B7P56937 341 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 TAS2R46P59540 309 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 MRPS11P82912 194 aaKnown RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 SPOCK1Q08629 439 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 UNC119Q13432 240 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 SSPNQ14714 243 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ZNF74Q16587 644 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 TMEM176BQ3YBM2 270 aaPredicted RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 ALKBH2Q6NS38 261 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ZNF573Q86YE8 665 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ZNF440Q8IYI8 595 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 CA13Q8N1Q1 262 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 SLC22A24Q8N4F4 322 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 METTL27Q8N6F8 245 aaPredicted RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 TMEM104Q8NE00 496 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OR5L2Q8NGL0 311 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 OR1L3Q8NH93 324 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ERGIC1Q969X5 290 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 FGGYQ96C11 551 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ACY3Q96HD9 319 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 ZNF385AQ96PM9 386 aaKnown RBP9.57□□□□□ -0.88
USP3-206ENST00000558157 SMIM3Q9BZL3 60 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 MYOTQ9UBF9 498 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 SPEGQ15772 3267 aa9.57□□□□□ -0.88
USP3-206ENST00000558157 SPTBP11277 2137 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 FOXS1O43638 330 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 PNPP00491 289 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 FHITP49789 147 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 PDLIM4P50479 330 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 HLA-DRB3P79483 266 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 ZNF506Q5JVG8 444 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 LSRQ86X29 649 aaPredicted RBP9.56□□□□□ -0.88
USP3-206ENST00000558157 FOXRED2Q8IWF2 684 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 TMEM156Q8N614 296 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 SLC35G3Q8N808 338 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 NAXEQ8NCW5 288 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 FAM213BQ8TBF2 198 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 CMBLQ96DG6 245 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 RBMXL1Q96E39 390 aaKnown RBP9.56□□□□□ -0.88
USP3-206ENST00000558157 SNX22Q96L94 193 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 AMELYQ99218 206 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 RARRES2Q99969 163 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 LMF2Q9BU23 707 aaKnown RBP9.56□□□□□ -0.88
USP3-206ENST00000558157 ANGPTL4Q9BY76 406 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 CTDSP1Q9GZU7 261 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms