RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 IL24Q13007 206 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 STUMQ69YW2 141 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 ZNF529Q6P280 563 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 ZNF367Q7RTV3 350 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 SATL1Q86VE3 508 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 FAM216BQ8N7L0 139 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 OR52N4Q8NGI2 321 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 TMEM203Q969S6 136 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 MGLLQ99685 303 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 SSBP3Q9BWW4 388 aaPredicted RBP11.95□□□□□ -0.5
USP3-205ENST00000557884 MTCH1Q9NZJ7 389 aa11.95□□□□□ -0.5
USP3-205ENST00000557884 SONP18583 2426 aaKnown RBP11.95□□□□□ -0.5
USP3-205ENST00000557884 TRAV8-7A0A075B6U6 113 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 TRAV20A0A0B4J274 112 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 OR2AT4A6NND4 320 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 MAGEB3O15480 346 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 NDUFA2O43678 99 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 CALCBP10092 127 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 SELLP14151 372 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 AMY2BP19961 511 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 RPS25P62851 125 aaKnown RBP11.94□□□□□ -0.5
USP3-205ENST00000557884 EMX1Q04741 257 aaPredicted RBP11.94□□□□□ -0.5
USP3-205ENST00000557884 MLLT11Q13015 90 aaPredicted RBP11.94□□□□□ -0.5
USP3-205ENST00000557884 PDZK1IP1Q13113 114 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 IKZF1Q13422 519 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 KISS1Q15726 138 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 SMIM21Q3B7S5 101 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 CRIP3Q6Q6R5 217 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 ZNF841Q6ZN19 808 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 ACP7Q6ZNF0 438 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 IL17RELQ6ZVW7 336 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 SPARTQ8N0X7 666 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 FGFRL1Q8N441 504 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 SVOPQ8N4V2 548 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 ANGPTL6Q8NI99 470 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 C12orf43Q96C57 262 aaKnown RBP11.94□□□□□ -0.5
USP3-205ENST00000557884 CEP19Q96LK0 163 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 DERL3Q96Q80 235 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 GPER1Q99527 375 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 SMURF1Q9HCE7 757 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 NOX4Q9NPH5 578 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 CKLFQ9UBR5 152 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 CLN8Q9UBY8 286 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 LRCH1Q9Y2L9 728 aa11.94□□□□□ -0.5
USP3-205ENST00000557884 MAGEA13PA6NCF6 341 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 NKX6-3A6NJ46 265 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 PIN1P1O15428 100 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 MRPS14O60783 128 aaKnown RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 NOS1APO75052 506 aaPredicted RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 ALX3O95076 343 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 CYB5AP00167 134 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 PSG2P11465 335 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 IGFBP3P17936 291 aaPredicted RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 BCL3P20749 454 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 TGFBR2P37173 567 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 NPBWR2P48146 333 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 CEBPDP49716 269 aaPredicted RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 TPBGQ13641 420 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 CR1LQ2VPA4 569 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 ACSM3Q53FZ2 586 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 FAM27D1Q5T7N8 215 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 DDI2Q5TDH0 399 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 WDR25Q64LD2 544 aaPredicted RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 FAHD2BQ6P2I3 314 aaPredicted RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 ZNF773Q6PK81 442 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 MKXQ8IYA7 352 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 MS4A15Q8N5U1 240 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 ST8SIA4Q92187 359 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 FAHD2AQ96GK7 314 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 GAFA1Q96PS6 74 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 FAM192AQ9GZU8 254 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 ISYNA1Q9NPH2 558 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 MMP26Q9NRE1 261 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 RBFOX1Q9NWB1 397 aaKnown RBP11.93□□□□□ -0.5
USP3-205ENST00000557884 RASL12Q9NYN1 266 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 IL36RNQ9UBH0 155 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 OR14J1Q9UGF5 321 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 OR5V1Q9UGF6 321 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 LRRC42Q9Y546 428 aa11.93□□□□□ -0.5
USP3-205ENST00000557884 FN1P02751 2386 aaKnown RBP11.92□□□□□ -0.5
USP3-205ENST00000557884 IGKV1D-17A0A075B6S4 117 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 IGKV1-12A0A0C4DH73 117 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 RFPL4AA6NLU0 287 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 A8MXK9 166 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 RFPL4AL1F8VTS6 287 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 TRAPPC2LH3BP13 241 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 DVL1O14640 695 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 FCN3O75636 299 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 IGKV1D-12P01611 117 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 TMEM225BP0DP42 221 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 CPEP16870 476 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 CPT2P23786 658 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 PSMB9P28065 219 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 BDKRB2P30411 391 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 SNU13P55769 128 aaKnown RBP11.92□□□□□ -0.5
USP3-205ENST00000557884 ZP1P60852 638 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 ERVK11-1P61568 191 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 GPR50Q13585 617 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 KCTD21Q4G0X4 260 aa11.92□□□□□ -0.5
USP3-205ENST00000557884 ARMCX4Q5H9R4 360 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms