RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CFHR2P36980 270 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 MDH2P40926 338 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 NPBWR2P48146 333 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 SNU13P55769 128 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 MXD1Q05195 221 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 MICBQ29980 383 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 AWAT2Q6E213 333 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 C1QL2Q7Z5L3 287 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 MAPK1IP1LQ8NDC0 245 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 OR10K1Q8NGX5 313 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 EMG1Q92979 244 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 NRIP2Q9BQI9 281 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 NAA50Q9GZZ1 169 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 RBFOX1Q9NWB1 397 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 PCDHB10Q9UN67 800 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 MRPS28Q9Y2Q9 187 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 ARFGEF3Q5TH69 2177 aa11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 ANKRD17O75179 2603 aaKnown RBP11.78□□□□□ -0.52
VIPAS39-208ENST00000556412 TRAV1-2A0A0B4J238 106 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 TRAV38-1A0A0B4J264 116 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 IGHV4-61A0A0C4DH41 118 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 VWC2LB2RUY7 222 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 F8VVB4 439 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 F8VWA3 439 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 GYPAP02724 150 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 RAB3BP20337 219 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 OR10A3P58181 314 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 RSU1Q15404 277 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 SMIM21Q3B7S5 101 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 GDPGP1Q6ZNW5 385 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 CLVS1Q8IUQ0 354 aaPredicted RBP11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 OR4D6Q8NGJ1 314 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 FOXRED1Q96CU9 486 aaPredicted RBP11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 REG4Q9BYZ8 158 aa11.77□□□□□ -0.52
VIPAS39-208ENST00000556412 SMAD7O15105 426 aaKnown RBP11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 TFF1P04155 84 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 PRKACAP17612 351 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 USF1P22415 310 aaPredicted RBP11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 SDC2P34741 201 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 MTNR1BP49286 362 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 GLIPR1L1Q6UWM5 242 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 LRRC28Q86X40 367 aaPredicted RBP11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 FAM90A1Q86YD7 464 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 MUC20Q8N307 709 aaPredicted RBP11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 ZSCAN4Q8NAM6 433 aaPredicted RBP11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 GFI1Q99684 422 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 TMEM246Q9BRR3 403 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 METTL9Q9H1A3 318 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 TMEM165Q9HC07 324 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 NLKQ9UBE8 527 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 OR14J1Q9UGF5 321 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 V9GY05 133 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 NOS1APO75052 506 aaPredicted RBP11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 HTR3BO95264 441 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 SFTPBP07988 381 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 SERPINA2P20848 420 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 VBP1P61758 197 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 NCS1P62166 190 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 KCNJ8Q15842 424 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 ZNF404Q494X3 552 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 SLC22A6Q4U2R8 563 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 HES5Q5TA89 166 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 ACP7Q6ZNF0 438 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 CDH26Q8IXH8 852 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 Q8IYB0 196 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 SAXO1Q8IYX7 474 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 SPICQ8N5J4 248 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 CLDND2Q8NHS1 167 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 UQCC2Q9BRT2 126 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 RASL12Q9NYN1 266 aa11.76□□□□□ -0.53
VIPAS39-208ENST00000556412 OR2AT4A6NND4 320 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 CEACAM18A8MTB9 384 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 H7C1Q1 480 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 KDM4BO94953 1096 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 CSTBP04080 98 aaKnown RBP11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 CLEC2LP0C7M8 214 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 RPS2P15880 293 aaKnown RBP11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 MUC1P15941 1255 aaPredicted RBP11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 HTR2CP28335 458 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 DUSP1P28562 367 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 GABRA2P47869 451 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 PSMD7P51665 324 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 CAV3P56539 151 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 CLDN12P56749 244 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 ERVK11-1P61568 191 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 P2RY14Q15391 338 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 RAB11BQ15907 218 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 TEX36Q5VZQ5 186 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 FIP1L1Q6UN15 594 aaKnown RBP11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 SLC16A12Q6ZSM3 486 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 ANKRD13BQ86YJ7 626 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 FAM58AQ8N1B3 248 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 PXT1Q8NFP0 134 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 OR6M1Q8NGM8 313 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 CCL13Q99616 98 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 IL36RNQ9UBH0 155 aa11.75□□□□□ -0.53
VIPAS39-208ENST00000556412 ADAM20O43506 726 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 NOL3O60936 208 aaKnown RBP11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 GABARAPO95166 117 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms