RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288		H3BSA7	217 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MLNR	O43193	412 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MPZL2	O60487	215 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	GMDS	O60547	372 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	LMX1B	O60663	402 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	ZNF254	O75437	659 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MTRF1	O75570	445 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	HTR1A	P08908	422 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM90A15P	P0C7V4	464 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM90A14P	P0C7W9	464 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	PPIAL4F	P0DN26	164 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	IGHV4-31	P0DP07	118 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	ANOS1	P23352	680 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	CFL1	P23528	166 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	GIF	P27352	417 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SRP14	P37108	136 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	DDOST	P39656	456 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	OPRL1	P41146	370 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SOX2	P48431	317 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM3B	P58499	235 aa	Predicted RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SNRPG	P62308	76 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	LCN2	P80188	198 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	EFNB1	P98172	346 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM3A	P98173	230 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SLC34A1	Q06495	639 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	RIPPLY1	Q0D2K3	151 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	PRDX4	Q13162	271 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MPPED2	Q15777	294 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	PCK2	Q16822	640 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM201A	Q5SY85	155 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MEDAG	Q5VYS4	303 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	TTC23	Q5W5X9	447 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM166A	Q6J272	317 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	LIN54	Q6MZP7	749 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	COLCA1	Q6ZS62	124 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	ZNF826P	Q6ZT77	177 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SSX6	Q7RTT6	188 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	C1orf87	Q8N0U7	546 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FTMT	Q8N4E7	242 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	RFLNB	Q8N5W9	214 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	NANOGP1	Q8N7R0	232 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	CSNK2A3	Q8NEV1	391 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	OR5T2	Q8NGG2	359 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	OR8B12	Q8NGG6	310 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	CLDND2	Q8NHS1	167 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	CNIH3	Q8TBE1	160 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	TRMT10A	Q8TBZ6	339 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	NPRL2	Q8WTW4	380 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MSI2	Q96DH6	328 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MRPL48	Q96GC5	212 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	OR8B4	Q96RC9	309 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	MICU1	Q9BPX6	476 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SLC30A2	Q9BRI3	323 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	ADAT1	Q9BUB4	502 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SLC22A4	Q9H015	551 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SHARPIN	Q9H0F6	387 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	METTL17	Q9H7H0	456 aa	Predicted RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	PPP1R3E	Q9H7J1	279 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	FN3KRP	Q9HA64	309 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	GPR84	Q9NQS5	396 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	GPR173	Q9NS66	373 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	DDX28	Q9NUL7	540 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	TMEM106B	Q9NUM4	274 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	CHCHD3	Q9NX63	227 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	DCAF16	Q9NXF7	216 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	ZNF319	Q9P2F9	582 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	RNF7	Q9UBF6	113 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	OR52A1	Q9UKL2	312 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	KCNS2	Q9ULS6	477 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SLC22A13	Q9Y226	551 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	NOP16	Q9Y3C1	178 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	RHBDD3	Q9Y3P4	386 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	RPL36	Q9Y3U8	105 aa	Known RBP	3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	WIPI2	Q9Y4P8	454 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	PPIAL4A	Q9Y536	164 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	PCDHGB1	Q9Y5G3	927 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	SNX5	Q9Y5X3	404 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	NPTN	Q9Y639	398 aa		3.9	□□□□□ -1.79
ATXN3-238	ENST00000556288	OTOG	Q6ZRI0	2925 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	ACOD1	A6NK06	481 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	PRR32	B1ATL7	298 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288		B4DSR2	109 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	ZNF732	B4DXR9	585 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	FAM157A	C9JC47	383 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	PTGES3L	E9PB15	166 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	TMEM178B	H3BS89	294 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	SYT7	O43581	403 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	PLPP2	O43688	288 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	CD5L	O43866	347 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	FADS2	O95864	444 aa	Known RBP	3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	PNP	P00491	289 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	SERPINA3	P01011	423 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	NRAS	P01111	189 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	GYPA	P02724	150 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	CD55	P08174	381 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	DBT	P11182	482 aa	Known RBP	3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	RPS2	P15880	293 aa	Known RBP	3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	HNF1A	P20823	631 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	CD80	P33681	288 aa		3.89	□□□□□ -1.79
ATXN3-238	ENST00000556288	PMEL	P40967	661 aa		3.89	□□□□□ -1.79

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