RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 GRPP07492 148 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 RPS10P46783 165 aaKnown RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 ECH1Q13011 328 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 TMPRSS7Q7RTY8 843 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 CYYR1Q96J86 154 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 SLC17A5Q9NRA2 495 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 RNASEK-C17orf49H0YIS7 233 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 GEMIN2O14893 280 aaKnown RBP13.04□□□□□ -0.32
CUX1-215ENST00000556210 TRAF3IP2O43734 574 aaPredicted RBP13.04□□□□□ -0.32
CUX1-215ENST00000556210 VAMP5O95183 116 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 ITGB2P05107 769 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 SFTA3P0C7M3 94 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 SHEQ5VZ18 495 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 STX12Q86Y82 276 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 MPTX1A8MV57 137 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 TK1P04183 234 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 NPBWR1P48145 328 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 CCL11P51671 97 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 WDSUB1Q8N9V3 476 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 FAM131CQ96AQ9 280 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 LPAR5Q9H1C0 372 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 USP34Q70CQ2 3546 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 C2orf16Q68DN1 1984 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 ARGFXA6NJG6 315 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 DHRS3O75911 302 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 CRHP06850 196 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 SERPINE2P07093 398 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 UBE2NP61088 152 aaKnown RBP13.04□□□□□ -0.32
CUX1-215ENST00000556210 VHLLQ6RSH7 139 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 HES7Q9BYE0 225 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 UFSP2Q9NUQ7 469 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 FAM206AQ9NX38 181 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 SH3BGRL2Q9UJC5 107 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 HS3ST3B1Q9Y662 390 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 TRAV14DV4A0A0A6YYC5 116 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 PGA4P0DJD7 388 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 PGA3P0DJD8 388 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 APLNRP35414 380 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 SNAI3Q3KNW1 292 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 PABPC1L2AQ5JQF8 200 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 TEX30Q5JUR7 227 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 CXorf67Q86X51 503 aaPredicted RBP13.04□□□□□ -0.32
CUX1-215ENST00000556210 PSMF1Q92530 271 aa13.04□□□□□ -0.32
CUX1-215ENST00000556210 THADAQ6YHU6 1953 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 FTCDNL1E5RQL4 147 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 IDH3GP51553 393 aaPredicted RBP13.03□□□□□ -0.32
CUX1-215ENST00000556210 ZNF260Q3ZCT1 412 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 OR5AP2Q8NGF4 316 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 OR1F12Q8NHA8 337 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 FBXO7Q9Y3I1 522 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 TTLL8A6PVC2 850 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 RPS16P62249 146 aaKnown RBP13.03□□□□□ -0.32
CUX1-215ENST00000556210 GPR157Q5UAW9 335 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 RPL7L1Q6DKI1 246 aaKnown RBP13.03□□□□□ -0.32
CUX1-215ENST00000556210 RXFP4Q8TDU9 374 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 FBXO17Q96EF6 278 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 PFDN5Q99471 154 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 WDR13Q9H1Z4 485 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 MOB1AQ9H8S9 216 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 FN3KRPQ9HA64 309 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 SPACA1Q9HBV2 294 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 MMP26Q9NRE1 261 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 LUZP4Q9P127 313 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 TIMM10BQ9Y5J6 103 aa13.03□□□□□ -0.32
CUX1-215ENST00000556210 GSTP1P09211 210 aaKnown RBP13.03□□□□□ -0.32
CUX1-215ENST00000556210 RPL12P30050 165 aaKnown RBP13.03□□□□□ -0.32
CUX1-215ENST00000556210 ARF1P84077 181 aaKnown RBP13.03□□□□□ -0.32
CUX1-215ENST00000556210 PRR14LQ5THK1 2151 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 CST7O76096 145 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 IFNA4P05014 189 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 FABP1P07148 127 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 RFPL3SP0C7P2 107 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 OR13C7P0DN81 318 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 TMEM268Q5VZI3 342 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 WDFY1Q8IWB7 410 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 OR56B2PQ8NGI1 322 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 OR2Y1Q8NGV0 311 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 POC1BQ8TC44 478 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 SAP25Q8TEE9 199 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 PIK3IP1Q96FE7 263 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 PBDC1Q9BVG4 233 aa13.02□□□□□ -0.32
CUX1-215ENST00000556210 CELSR3Q9NYQ7 3312 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 COL6A6A6NMZ7 2263 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 AQP7P3A6NL99 342 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 ANKRD30BLA7E2S9 258 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 DUS4LO95620 317 aaKnown RBP13.02□□□□□ -0.33
CUX1-215ENST00000556210 SLC25A42Q86VD7 318 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 ZDHHC22Q8N966 263 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 ISOC2Q96AB3 205 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 TCEAL7Q9BRU2 100 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 FAM234AQ9H0X4 552 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 FAM212BQ9NTI7 297 aaPredicted RBP13.02□□□□□ -0.33
CUX1-215ENST00000556210 ZNF587BE7ETH6 402 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 NQO2P16083 231 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 PCBD1P61457 104 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 ZNF345Q14585 488 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 ARL6IP1Q15041 203 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 RHEBQ15382 184 aa13.02□□□□□ -0.33
CUX1-215ENST00000556210 LILRB1Q8NHL6 650 aaPredicted RBP13.02□□□□□ -0.33
CUX1-215ENST00000556210 GLYATL2Q8WU03 294 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms