RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ONECUT1Q9UBC0 465 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 RFPL4AA6NLU0 287 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 RFPL4AL1F8VTS6 287 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 SLC1A7O00341 560 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 NXPH2O95156 264 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 FADS2O95864 444 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 SERPINA3P01011 423 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 PRDX2P32119 198 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 GABRA2P47869 451 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 OR12D2P58182 307 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 LPCAT4Q643R3 524 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 Q8IYB0 196 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 PIP4P2Q8N4L2 257 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 CD177Q8N6Q3 437 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 TBC1D15Q8TC07 691 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 H1FXQ92522 213 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 ZDHHC16Q969W1 377 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 SPSB1Q96BD6 273 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 PELI1Q96FA3 418 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 DUX5Q96PT3 197 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 ZNF649Q9BS31 505 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 ZNF747Q9BV97 191 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 CAB39Q9Y376 341 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 MMP24Q9Y5R2 645 aa13.17□□□□□ -0.3
CCDC88C-209ENST00000554872 IGKV1-27A0A075B6S5 117 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 A6NIN4 97 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 OR4C45A6NMZ5 311 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 POM121CA8CG34 1229 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 RNASEK-C17orf49H0YIS7 233 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 MT-ND2P03891 347 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 NDUFB7P17568 137 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 UBE2E1P51965 193 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 NANOS3P60323 173 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 ACSM1Q08AH1 577 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 BLMHQ13867 455 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 ODF4Q2M2E3 257 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 TMEM185AQ8NFB2 350 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 OR5D13Q8NGL4 314 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 CEP19Q96LK0 163 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 ZNF488Q96MN9 340 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 SMPD3Q9NY59 655 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 HHLA2Q9UM44 414 aa13.16□□□□□ -0.3
CCDC88C-209ENST00000554872 A0A1B0GUS0 222 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 A0A1W2PPH5 198 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 ALX3O95076 343 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 TFF1P04155 84 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 HTR1AP08908 422 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 PRKACBP22694 351 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 RBP2P50120 134 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 ANGPTL5Q86XS5 388 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 PACRGLQ8N7B6 248 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 APH1BQ8WW43 257 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 STMN2Q93045 179 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 ADAT3Q96EY9 351 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 BORCS8Q96FH0 119 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 C4orf36Q96KX1 117 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 ALG8Q9BVK2 526 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 ERVK13-1Q9NX77 482 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 MTCH1Q9NZJ7 389 aa13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 RPL36Q9Y3U8 105 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-209ENST00000554872 NBEAL1Q6ZS30 2694 aa13.15□□□□□ -0.31
CCDC88C-209ENST00000554872 IGKV1-9A0A0C4DH69 117 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 A0A0U1RQK1 487 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 FAM230AA0A1W2PPH8 454 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 A0A1W2PQ09 198 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 K7N7A8 449 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 NPFFO15130 113 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 NDUFA7O95182 113 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 RBP4P02753 201 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 TK1P04183 234 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 FBP1P09467 338 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 EEF1B2P24534 225 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 IER3P46695 156 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 ALKBH1Q13686 389 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 SHISA2Q6UWI4 295 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 LHFPL2Q6ZUX7 228 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 RDH10Q8IZV5 341 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 SGMS2Q8NHU3 365 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 TRMT10AQ8TBZ6 339 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 DYRK2Q92630 601 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 RHOFQ9HBH0 211 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 FGF20Q9NP95 211 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 SIRT7Q9NRC8 400 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNRD1Q9P1U0 126 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 MYRFQ9Y2G1 1151 aa13.14□□□□□ -0.31
CCDC88C-209ENST00000554872 TRBV2A0A0J9YWF9 115 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 TMEM212A6NML5 194 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 J3QLW9 94 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF737O75373 536 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 CHRM2P08172 466 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF19P17023 458 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 ATF1P18846 271 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 ATP1B3P54709 279 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 RPL31P62899 125 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 MIDNQ504T8 468 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 KLHL22Q53GT1 634 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 MKXQ8IYA7 352 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 ZNF555Q8NEP9 628 aa13.13□□□□□ -0.31
CCDC88C-209ENST00000554872 OR52I1Q8NGK6 324 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms