RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 INPP5EQ9NRR6 644 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 ONECUT1Q9UBC0 465 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 IL36RNQ9UBH0 155 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 SLC25A10Q9UBX3 287 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 HHLA2Q9UM44 414 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 SLC7A11Q9UPY5 501 aa9.55□□□□□ -0.88
CCDC88C-208ENST00000554165 CENPVL3A0A0U1RRI6 287 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 NOS1APO75052 506 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 NXPH2O95156 264 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 PPIAL4GP0DN37 164 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF20P17024 532 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 ATF1P18846 271 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 FPR2P25090 351 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 PRDX2P32119 198 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 NPBWR2P48146 333 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 POU3F4P49335 361 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 FUT6P51993 359 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 GBX2P52951 348 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 SLC34A1Q06495 639 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 LRRC10Q5BKY1 277 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 CRIP3Q6Q6R5 217 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 Q8N7P7 452 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 PNLDC1Q8NA58 520 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 TMEM185AQ8NFB2 350 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 OR13C9Q8NGT0 318 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 SPATA3Q8NHX4 192 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 LHX4Q969G2 390 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 SDSLQ96GA7 329 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 MED30Q96HR3 178 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 NKX3-1Q99801 234 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 MS4A7Q9GZW8 240 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 DCLRE1BQ9H816 532 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 HES4Q9HCC6 221 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 C8orf4Q9NR00 106 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 RASL12Q9NYN1 266 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 OR14J1Q9UGF5 321 aa9.54□□□□□ -0.88
CCDC88C-208ENST00000554165 A0A0A6YYJ9 748 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 IGKV1-12A0A0C4DH73 117 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 TRBV2A0A0J9YWF9 115 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 A0A1W2PRD5 423 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 A0A1W2PRF3 423 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 A0A1W2PRM7 423 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 MEX3AA1L020 520 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SPRY1O43609 319 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 ANGPTL7O43827 346 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 GATBO75879 557 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 ECDO95905 644 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SERPINA3P01011 423 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 IGKV1D-12P01611 117 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 AZGP1P25311 298 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 DCKP27707 260 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 DUSP1P28562 367 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SOX2P48431 317 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 CAPZA1P52907 286 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 MTCP1P56278 107 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 ST3GAL4Q11206 333 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 IL24Q13007 206 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 KLRD1Q13241 179 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 DEFB112Q30KQ8 113 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SMIM21Q3B7S5 101 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 METTL11BQ5VVY1 283 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 ASPHD2Q6ICH7 369 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 USP43Q70EL4 1123 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 UTS2BQ765I0 119 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 VMO1Q7Z5L0 202 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 C8orf59Q8N0T1 100 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 PNKDQ8N490 385 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 ZFP41Q8N8Y5 198 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SETD9Q8NE22 299 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 CCDC54Q8NEL0 328 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 OR4M1Q8NGD0 313 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 OR5D18Q8NGL1 313 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 OR13C5Q8NGS8 318 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 OR5AK2Q8NH90 309 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 FBLIM1Q8WUP2 373 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 PP6455Q8WZ26 134 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SGCDQ92629 289 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 TFAP2CQ92754 450 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 ORAI1Q96D31 301 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 BORCS8Q96FH0 119 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 MRPL48Q96GC5 212 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 CEP19Q96LK0 163 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 JAM3Q9BX67 310 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 PKIBQ9C010 78 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 DNTTIP1Q9H147 329 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 SIRT7Q9NRC8 400 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 C19orf12Q9NSK7 152 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 RBFOX1Q9NWB1 397 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 DIMT1Q9UNQ2 313 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 POLDIP2Q9Y2S7 368 aa9.53□□□□□ -0.88
CCDC88C-208ENST00000554165 DNAJC9-AS1A6NH13 148 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 TMEM212A6NML5 194 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 H0YAE9 185 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 LIPFP07098 398 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 BCL3P20749 454 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 AQP4P55087 323 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 SNU13P55769 128 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 CAV3P56539 151 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 ERVFRD-1P60508 538 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 UBA52P62987 128 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms