RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 TNFRSF14Q92956 283 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 STMN2Q93045 179 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 LHX4Q969G2 390 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 ADI1Q9BV57 179 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 ALG8Q9BVK2 526 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 ISG20L2Q9H9L3 353 aaKnown RBP8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 PLEKHA1Q9HB21 404 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 ELL3Q9HB65 397 aaPredicted RBP8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 BATF3Q9NR55 127 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 ERVK13-1Q9NX77 482 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 MTCH1Q9NZJ7 389 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 NKX1-2Q9UD57 310 aaPredicted RBP8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC7A11Q9UPY5 501 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 POLDIP2Q9Y2S7 368 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 TGP01266 2768 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 PKD1L1Q8TDX9 2849 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 IGHV1-69DA0A0B4J2H0 117 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 VGLL3A8MV65 326 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 E9PI62 339 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 WIPF1O43516 503 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 GATBO75879 557 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 CLIC3O95833 236 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 FADS2O95864 444 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 IGHV1-69P01742 117 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 RNASE1P07998 156 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 HTR1AP08908 422 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 NDUFB7P17568 137 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 PRDX2P32119 198 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 FUT6P51993 359 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ACTA2P62736 377 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ACTG1P63261 375 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ACTG2P63267 376 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ALKBH1Q13686 389 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 SMN1Q16637 294 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 SMIM21Q3B7S5 101 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF691Q5VV52 312 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 LPCAT4Q643R3 524 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 C12orf54Q6X4T0 127 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 Q6YL49 198 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 UTS2BQ765I0 119 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 BATF2Q8N1L9 274 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 DNAAF1Q8NEP3 725 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 OR51A4Q8NGJ6 313 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 GATAD2BQ8WXI9 593 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 PP6455Q8WZ26 134 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 H1FXQ92522 213 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 GCDHQ92947 438 aaPredicted RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 FGGYQ96C11 551 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 JAM3Q9BX67 310 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ZMAT3Q9HA38 289 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 FGF20Q9NP95 211 aaPredicted RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 INPP5EQ9NRR6 644 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 ONECUT1Q9UBC0 465 aa8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 RPL36Q9Y3U8 105 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-206ENST00000553437 TRBV23-1A0A0A0MS06 115 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 RNASEK-C17orf49H0YIS7 233 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 HOXA3O43365 443 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 NXPH2O95156 264 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 SERPINA3P01011 423 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 KNG1P01042 644 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 LIMS3P0CW19 117 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 LIMS4P0CW20 117 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 HKR1P10072 659 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 ATF1P18846 271 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 CFPP27918 469 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 PEX2P28328 305 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 VHLP40337 213 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 CEBPDP49716 269 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 DLX1P56177 255 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 ADARB1P78563 741 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 PRB3Q04118 309 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 RCN1Q15293 331 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 LRRC36Q1X8D7 754 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 KLHL22Q53GT1 634 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 CRIP3Q6Q6R5 217 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 METAP1DQ6UB28 335 aaPredicted RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 C1orf122Q6ZSJ8 110 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 PDZD9Q8IXQ8 264 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 CMTM4Q8IZR5 234 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF561Q8N587 486 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 PACRGLQ8N7B6 248 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF555Q8NEP9 628 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 TMEM185AQ8NFB2 350 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 MRPL48Q96GC5 212 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 UNKLQ9H9P5 680 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 NOX4Q9NPH5 578 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 C8orf4Q9NR00 106 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 SIRT7Q9NRC8 400 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 HHLA2Q9UM44 414 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 LRRC42Q9Y546 428 aa8.43□□□□□ -1.06
CCDC88C-206ENST00000553437 A0A0U1RQK1 487 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 M0R1W7 72 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 ZFPL1O95159 310 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 MT-ND2P03891 347 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 MELTFP08582 738 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 RPSAP08865 295 aaKnown RBP8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 PRKACBP22694 351 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 AZGP1P25311 298 aaKnown RBP8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC34A1Q06495 639 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 MRPL28Q13084 256 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms