RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 CDCP2Q5VXM1 449 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 CNIH2Q6PI25 160 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 SUMF1Q8NBK3 374 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 RHOXF1Q8NHV9 184 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 SMIM19Q96E16 107 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 MAP6Q96JE9 813 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 OR14A2Q96R54 314 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 ARPC5LQ9BPX5 153 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 TMUB1Q9BVT8 246 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 TUBB1Q9H4B7 451 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 C19orf12Q9NSK7 152 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 TAS2R4Q9NYW5 299 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FLVCR1Q9Y5Y0 555 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 J3KTA2 159 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 HAND1O96004 215 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 GNLYP22749 145 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 PPP1CCP36873 323 aaKnown RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 ACSM6Q6P461 480 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 ARRDC1Q8N5I2 433 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 OR8G5Q8NG78 346 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 MALSU1Q96EH3 234 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 IMMP1LQ96LU5 166 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 ZNF552Q9H707 407 aaPredicted RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 PLCXD1Q9NUJ7 323 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 IL20Q9NYY1 176 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A10PA6NDY2 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A18PA6NE21 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A16PA6NEW6 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A20PA6NIJ5 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A8PA6NJQ4 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A7PA6NKC0 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A22PA8MWA6 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A12PA8MX19 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A5PA8MXJ8 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A23PA8MXZ1 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 B4DSR2 109 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FABP7O15540 132 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A15PP0C7V4 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A13PP0C7W8 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A14PP0C7W9 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A24PP0C7X0 464 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 S100A12P80511 92 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FAM162BQ5T6X4 162 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 GGNBP1Q5YKI7 109 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 SP5Q6BEB4 398 aaPredicted RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 DLEU7Q6UYE1 221 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 ZNF431Q8TF32 576 aaPredicted RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 FLYWCH2Q96CP2 140 aaKnown RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 RSRP1Q9BUV0 290 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 PSORS1C1Q9UIG5 152 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 DHRS7CA6NNS2 312 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 C3orf80F5H4A9 247 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 AGAP20933 346 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 USF1P22415 310 aaPredicted RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 NKX2-1P43699 371 aaPredicted RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 NUTF2P61970 127 aaKnown RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 CDK5R1Q15078 307 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 ACOT6Q3I5F7 207 aaPredicted RBP7.08□□□□□ -1.28
PTPRB-209ENST00000550857 TSPO2Q5TGU0 170 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 CD300LDQ6UXZ3 194 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 CHAC2Q8WUX2 184 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 SLC25A28Q96A46 364 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 SIGLEC7Q9Y286 467 aa7.08□□□□□ -1.28
PTPRB-209ENST00000550857 RAB6AP20340 208 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 UBE2MP61081 183 aaKnown RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 FAM90A1Q86YD7 464 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 ASB13Q8WXK3 278 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 VWCEQ96DN2 955 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 GNPNAT1Q96EK6 184 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 FGF20Q9NP95 211 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 ZNF638Q14966 1978 aaKnown RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 A0A1W2PQL4 384 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 M0R036 132 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 COX7A2P2O60397 106 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 TPPPO94811 219 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 GALP22466 123 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 CD40P25942 277 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 S100A2P29034 98 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 CORO6Q6QEF8 472 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 C20orf196Q8IYI0 205 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 UBAC2Q8NBM4 344 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 LILRB4Q8NHJ6 448 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 GABARAPL3Q9BY60 117 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 MED20Q9H944 212 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 ZMAT3Q9HA38 289 aaKnown RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 KLF2Q9Y5W3 355 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 PPIAL4CA0A0B4J2A2 164 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 A0A1W2PR80 420 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 K7EPK0 472 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 PPIAL4GP0DN37 164 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 RPA2P15927 270 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 HLA-DMAP28067 261 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 FAM71E2Q8N5Q1 922 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 OR52M1Q8NGK5 317 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 RAX2Q96IS3 184 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 HSD17B10Q99714 261 aaKnown RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 LOC390937A0A1W2PQ73 354 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 OR5G3P0C626 314 aa7.07□□□□□ -1.28
PTPRB-209ENST00000550857 S100A4P26447 101 aaKnown RBP7.07□□□□□ -1.28
PTPRB-209ENST00000550857 ATXN7L3Q14CW9 347 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms