RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SPDEFO95238 335 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 PGAM2P15259 253 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 CPT2P23786 658 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 ERVS71-1P61550 626 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 CHRFAM7AQ494W8 412 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 C3P1Q6ZMU1 363 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 SLC25A42Q86VD7 318 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 TMEM17Q86X19 198 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 ZNF611Q8N823 705 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 OR10AD1Q8NGE0 317 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 TERB2Q8NHR7 220 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 TMEM230Q96A57 120 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 TMEM45BQ96B21 275 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 MARS2Q96GW9 593 aaKnown RBP9.57□□□□□ -0.88
CUX1-212ENST00000547394 TRIB1Q96RU8 372 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 METTL9Q9H1A3 318 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 PARPBPQ9NWS1 579 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 C5orf51A6NDU8 294 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 AGTR1P30556 359 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 HAAOP46952 286 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 FXYD4P59646 89 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 LYG2Q86SG7 212 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 HOGA1Q86XE5 327 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 FOXRED2Q8IWF2 684 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 PPP1R1CQ8WVI7 109 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 TOMM40LQ969M1 308 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 GPHA2Q96T91 129 aa9.57□□□□□ -0.88
CUX1-212ENST00000547394 ARPC4-TTLL3A0A0A6YYG9 625 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 TM4SF5O14894 197 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 UBBP0CG47 229 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 WNT5AP41221 380 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 PDZK1IP1Q13113 114 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 KRTAP27-1Q3LI81 207 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 AADACL3Q5VUY0 350 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 OR2T2Q6IF00 324 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 RPUSD3Q6P087 351 aaKnown RBP9.56□□□□□ -0.88
CUX1-212ENST00000547394 Q6ZPA2 131 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 TMUB2Q71RG4 321 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 ZNF767PQ75MW2 155 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 MRPL21Q7Z2W9 205 aaKnown RBP9.56□□□□□ -0.88
CUX1-212ENST00000547394 P4HA3Q7Z4N8 544 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 CCDC28AQ8IWP9 274 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 COQ8AQ8NI60 647 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 EMG1Q92979 244 aaKnown RBP9.56□□□□□ -0.88
CUX1-212ENST00000547394 KCNN3Q9UGI6 736 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 KIAA2026Q5HYC2 2103 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 KMT2EQ8IZD2 1858 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 BCL3P20749 454 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 PRDX4Q13162 271 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 CNN3Q15417 329 aaKnown RBP9.56□□□□□ -0.88
CUX1-212ENST00000547394 MDP1Q86V88 176 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 SLC38A6Q8IZM9 456 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 C17orf78Q8N4C9 275 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 ZSCAN4Q8NAM6 433 aaPredicted RBP9.56□□□□□ -0.88
CUX1-212ENST00000547394 HPSE2Q8WWQ2 592 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 TRAF4Q9BUZ4 470 aaPredicted RBP9.56□□□□□ -0.88
CUX1-212ENST00000547394 C1QTNF5Q9BXJ0 243 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 MFFQ9GZY8 342 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 WDR13Q9H1Z4 485 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 PPA2Q9H2U2 334 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 BCO1Q9HAY6 547 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 ARHGAP21Q5T5U3 1957 aa9.56□□□□□ -0.88
CUX1-212ENST00000547394 ZNF816-ZNF321PA0A0X1KG74 233 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 SYNGR1O43759 233 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 SERPINF1P36955 418 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 NOVA1P51513 510 aaKnown RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 IDH3GP51553 393 aaPredicted RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 ANKRD55Q3KP44 614 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 FAM74A1Q5RGS3 127 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 PRSS33Q8NF86 280 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 OR5M8Q8NGP6 311 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 SPSB1Q96BD6 273 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 CMSS1Q9BQ75 279 aaKnown RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 OCSTAMPQ9BR26 566 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 ZNF2Q9BSG1 426 aaPredicted RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 RTBDNQ9BSG5 229 aaPredicted RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 SLC2A8Q9NY64 477 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 SLC7A11Q9UPY5 501 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 LEUTXA8MZ59 168 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 AGFG2O95081 481 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 HOXB5P09067 269 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 DAZAP2Q15038 168 aaPredicted RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 OR8B8Q15620 311 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 SP6Q3SY56 376 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 CLEC18BQ6UXF7 455 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 ZNF546Q86UE3 836 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 RELL2Q8NC24 303 aaPredicted RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 ANGPTL6Q8NI99 470 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 IP6K3Q96PC2 410 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 DMRTA2Q96SC8 542 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 ALX4Q9H161 411 aaPredicted RBP9.55□□□□□ -0.88
CUX1-212ENST00000547394 CACNA1DQ01668 2161 aa9.55□□□□□ -0.88
CUX1-212ENST00000547394 ZNF732B4DXR9 585 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 LINC01387J3KSC0 135 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 SCGNO76038 276 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 SUPT4H1P63272 117 aaKnown RBP9.54□□□□□ -0.88
CUX1-212ENST00000547394 ALKBH6Q3KRA9 238 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 TMEM42Q69YG0 159 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 CDH26Q8IXH8 852 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 OSR2Q8N2R0 312 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms