RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 ARF6P62330 175 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 METAP1DQ6UB28 335 aaPredicted RBP9.41□□□□□ -0.9
YBX3-216ENST00000544622 C1orf122Q6ZSJ8 110 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 DHRSXQ8N5I4 330 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 CD177Q8N6Q3 437 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 Q8N7P7 452 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.41□□□□□ -0.9
YBX3-216ENST00000544622 RPS4Y2Q8TD47 263 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 HAVCR2Q8TDQ0 301 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 FGGYQ96C11 551 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 PLEKHA1Q9HB21 404 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 SLC25A10Q9UBX3 287 aaPredicted RBP9.41□□□□□ -0.9
YBX3-216ENST00000544622 NKX1-2Q9UD57 310 aaPredicted RBP9.41□□□□□ -0.9
YBX3-216ENST00000544622 HHLA2Q9UM44 414 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 SLC7A11Q9UPY5 501 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 KPTNQ9Y664 436 aa9.41□□□□□ -0.9
YBX3-216ENST00000544622 IGHV3OR16-10A0A075B7F0 116 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 FAM230AA0A1W2PPH8 454 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 CLDN34H7C241 214 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 RPSAP08865 295 aaKnown RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 PRDX2P32119 198 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 CAPGP40121 348 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 COMPP49747 757 aaPredicted RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 RBP2P50120 134 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 ETV1P50549 477 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 GTF2A1P52655 376 aaPredicted RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 GABPB1Q06547 395 aaPredicted RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 PDCD1Q15116 288 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 SMIM21Q3B7S5 101 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 CCDC58Q4VC31 144 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 METTL11BQ5VVY1 283 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 XAF1Q6GPH4 301 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 BRD3OSQ6XYD6 125 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 PARP16Q8N5Y8 322 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 KIR3DL3Q8N743 410 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 SIGLECL1Q8N7X8 197 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 ZNF485Q8NCK3 441 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 SETD9Q8NE22 299 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 TRMT10AQ8TBZ6 339 aaKnown RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 TFAP2CQ92754 450 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 GGHQ92820 318 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 TNFRSF14Q92956 283 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 MRPL48Q96GC5 212 aaKnown RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 PCGF1Q9BSM1 259 aa9.4□□□□□ -0.9
YBX3-216ENST00000544622 MS4A7Q9GZW8 240 aaPredicted RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 UNKLQ9H9P5 680 aaKnown RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 SEBOXQ9HB31 216 aaPredicted RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 DIMT1Q9UNQ2 313 aaKnown RBP9.4□□□□□ -0.9
YBX3-216ENST00000544622 TMEM89A2RUT3 159 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 NKX6-3A6NJ46 265 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 TMEM212A6NML5 194 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 TRIM77I1YAP6 450 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 KNG1P01042 644 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 ATF1P18846 271 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 PRTN3P24158 256 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 AZGP1P25311 298 aaKnown RBP9.39□□□□□ -0.91
YBX3-216ENST00000544622 GABRA2P47869 451 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 UBA52P62987 128 aaKnown RBP9.39□□□□□ -0.91
YBX3-216ENST00000544622 CNN3Q15417 329 aaKnown RBP9.39□□□□□ -0.91
YBX3-216ENST00000544622 OR2G6Q5TZ20 316 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 GPR157Q5UAW9 335 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 ASPHD2Q6ICH7 369 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 ZNF529Q6P280 563 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 RNF144BQ7Z419 303 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 ZNF561Q8N587 486 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 C11orf42Q8N5U0 333 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 ZNF676Q8N7Q3 588 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 NPRL2Q8WTW4 380 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 CYGBQ8WWM9 190 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 SPSB1Q96BD6 273 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 BORCS8Q96FH0 119 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 CEP19Q96LK0 163 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 PDCD1LG2Q9BQ51 273 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 PLCXD1Q9NUJ7 323 aa9.39□□□□□ -0.91
YBX3-216ENST00000544622 CAB39Q9Y376 341 aaPredicted RBP9.39□□□□□ -0.91
YBX3-216ENST00000544622 SIRT4Q9Y6E7 314 aaPredicted RBP9.39□□□□□ -0.91
YBX3-216ENST00000544622 IRGMA1A4Y4 181 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 OGG1O15527 345 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 ZNF737O75373 536 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 NXPH2O95156 264 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 LALBAP00709 142 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 CCDC159P0C7I6 412 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 PIPP12273 146 aaPredicted RBP9.38□□□□□ -0.91
YBX3-216ENST00000544622 PRKACBP22694 351 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 NPBWR2P48146 333 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 GBX2P52951 348 aaPredicted RBP9.38□□□□□ -0.91
YBX3-216ENST00000544622 MTCP1P56278 107 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 SLC34A1Q06495 639 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 PDZK1IP1Q13113 114 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 CDK5R1Q15078 307 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 RPL22L1Q6P5R6 122 aaKnown RBP9.38□□□□□ -0.91
YBX3-216ENST00000544622 Q6YL49 198 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 SLC25A26Q70HW3 274 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 VMO1Q7Z5L0 202 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 SERPINA12Q8IW75 414 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 BATF2Q8N1L9 274 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 OR5AK2Q8NH90 309 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 NRG4Q8WWG1 115 aa9.38□□□□□ -0.91
YBX3-216ENST00000544622 RGP1Q92546 391 aaPredicted RBP9.38□□□□□ -0.91
YBX3-216ENST00000544622 TMEM80Q96HE8 168 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms