RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GCSAM	Q8N6F7	178 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	POC1A	Q8NBT0	407 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR5T2	Q8NGG2	359 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR10K1	Q8NGX5	313 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	C10orf105	Q8TEF2	133 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	EMG1	Q92979	244 aa	Known RBP	8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545		Q96MF0	132 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	UQCC2	Q9BRT2	126 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	BPESC1	Q9GZL8	116 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	WDR13	Q9H1Z4	485 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	PCDHB16	Q9NRJ7	776 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	MTCH1	Q9NZJ7	389 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	PCDHB10	Q9UN67	800 aa		8.54	□□□□□ -1.04
CPSF7-221	ENST00000543545	IGKV1-12	A0A0C4DH73	117 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	OOEP	A6NGQ2	149 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	SRRM5	B3KS81	715 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	NOS1AP	O75052	506 aa	Predicted RBP	8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	GABARAP	O95166	117 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	LHB	P01229	141 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	IGKV1D-12	P01611	117 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	PRKACA	P17612	351 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	GIF	P27352	417 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	MDH2	P40926	338 aa	Known RBP	8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	NR4A2	P43354	598 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	RANBP1	P43487	201 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	GABRA2	P47869	451 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	NPBWR2	P48146	333 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	TMBIM6	P55061	237 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	CAV3	P56539	151 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	RIN1	Q13671	783 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	BLMH	Q13867	455 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	ZMYND11	Q15326	602 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	KCNJ8	Q15842	424 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	SMIM21	Q3B7S5	101 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	HES5	Q5TA89	166 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	FIP1L1	Q6UN15	594 aa	Known RBP	8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	C1QL2	Q7Z5L3	287 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545		Q8IYB0	196 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	FAM58A	Q8N1B3	248 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	PXT1	Q8NFP0	134 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR4D6	Q8NGJ1	314 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR6M1	Q8NGM8	313 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	RAB2B	Q8WUD1	216 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	SEH1L	Q96EE3	360 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	GAL3ST1	Q99999	423 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	NRIP2	Q9BQI9	281 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	TMEM165	Q9HC07	324 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	RBFOX1	Q9NWB1	397 aa	Known RBP	8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	RASL12	Q9NYN1	266 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	NLK	Q9UBE8	527 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR14J1	Q9UGF5	321 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	GLS2	Q9UI32	602 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	ARFGEF3	Q5TH69	2177 aa		8.53	□□□□□ -1.04
CPSF7-221	ENST00000543545	ARID1A	O14497	2285 aa		8.52	□□□□□ -1.04
CPSF7-221	ENST00000543545	HRNR	Q86YZ3	2850 aa	Predicted RBP	8.52	□□□□□ -1.04
CPSF7-221	ENST00000543545	NOTO	A8MTQ0	251 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545		F8VVB4	439 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545		F8VWA3	439 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	SLC17A2	O00624	439 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	ZNF780A	O75290	641 aa	Predicted RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	KDM4B	O94953	1096 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	GYPA	P02724	150 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	ACAA1	P09110	424 aa	Predicted RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	ARSB	P15848	533 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	MUC1	P15941	1255 aa	Predicted RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	SLC25A16	P16260	332 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	SERPINA2	P20848	420 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	DUSP1	P28562	367 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	RPS19	P39019	145 aa	Known RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	CLDN12	P56749	244 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	SCN1B	Q07699	218 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	GPR176	Q14439	515 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	CTF1	Q16619	201 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	C1orf100	Q5SVJ3	147 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	IDNK	Q5T6J7	187 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	CRIP3	Q6Q6R5	217 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	ACP7	Q6ZNF0	438 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	SLC16A12	Q6ZSM3	486 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	USP43	Q70EL4	1123 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	LRRC28	Q86X40	367 aa	Predicted RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	MUC20	Q8N307	709 aa	Predicted RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	SPIC	Q8N5J4	248 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	WFDC11	Q8NEX6	87 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	GFI1	Q99684	422 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	GHRL	Q9UBU3	117 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	DAPK2	Q9UIK4	370 aa		8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	ASH1L	Q9NR48	2969 aa	Known RBP	8.52	□□□□□ -1.05
CPSF7-221	ENST00000543545	LRBA	P50851	2863 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	RAI1	Q7Z5J4	1906 aa	Predicted RBP	8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	NKX6-3	A6NJ46	265 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	RFPL4A	A6NLU0	287 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	IFITM5	A6NNB3	132 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	OR2AT4	A6NND4	320 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	RNF223	E7ERA6	249 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	RFPL4AL1	F8VTS6	287 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	SLC22A1	O15245	554 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	ADAM20	O43506	726 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	NDUFA2	O43678	99 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	CRTAP	O75718	401 aa	Predicted RBP	8.51	□□□□□ -1.05

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms