RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ARHGDIBP52566 201 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 SNU13P55769 128 aaKnown RBP8.58□□□□□ -1.04
SS18-205ENST00000542420 FAM3AP98173 230 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 OR1C1Q15619 314 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 Q6ZS49 121 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 HSD17B13Q7Z5P4 300 aaPredicted RBP8.58□□□□□ -1.04
SS18-205ENST00000542420 MDS2Q8NDY4 140 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 ZNF837Q96EG3 531 aaPredicted RBP8.58□□□□□ -1.04
SS18-205ENST00000542420 WDR89Q96FK6 387 aaPredicted RBP8.58□□□□□ -1.04
SS18-205ENST00000542420 SPACA5Q96QH8 159 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 SMOC1Q9H4F8 434 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 TMEM9BQ9NQ34 198 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 C5orf63A6NC05 138 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 ZNF587BE7ETH6 402 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 SS18L1O75177 396 aaPredicted RBP8.57□□□□□ -1.04
SS18-205ENST00000542420 CRHP06850 196 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 CTSDP07339 412 aaPredicted RBP8.57□□□□□ -1.04
SS18-205ENST00000542420 PET100P0DJ07 73 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 SERPINA2P20848 420 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 ACKR3P25106 362 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 NTF4P34130 210 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 NAAAQ02083 359 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 RSU1Q15404 277 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 CHRFAM7AQ494W8 412 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 RNF144BQ7Z419 303 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 SKA3Q8IX90 412 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 CSNK2A3Q8NEV1 391 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 OR5T2Q8NGG2 359 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 MARCH1Q8TCQ1 289 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 ALKBH3Q96Q83 286 aaPredicted RBP8.57□□□□□ -1.04
SS18-205ENST00000542420 TTTY12Q9BZ98 90 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 C5orf66Q9H5L9 145 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 FN3KRPQ9HA64 309 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 RHOFQ9HBH0 211 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 PFDN2Q9UHV9 154 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 PLATP00750 562 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 SP1P08047 785 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 TMEM225BP0DP42 221 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 B4GALT1P15291 398 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 PSMB6P28072 239 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 CHATP28329 748 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 AADACL3Q5VUY0 350 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 ZNF660Q6AZW8 331 aaPredicted RBP8.57□□□□□ -1.04
SS18-205ENST00000542420 ELP2Q6IA86 826 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 C1QL2Q7Z5L3 287 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 TMEM200AQ86VY9 491 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 BVESQ8NE79 360 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 OR13G1Q8NGZ3 307 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 STOML3Q8TAV4 291 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 PPP1R1CQ8WVI7 109 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 TMEM230Q96A57 120 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 GPR173Q9NS66 373 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 PLEKHJ1Q9NW61 149 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 DNAJB11Q9UBS4 358 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 PURGQ9UJV8 347 aaKnown RBP8.57□□□□□ -1.04
SS18-205ENST00000542420 C14orf166Q9Y224 244 aaKnown RBP8.57□□□□□ -1.04
SS18-205ENST00000542420 MEMO1Q9Y316 297 aa8.57□□□□□ -1.04
SS18-205ENST00000542420 MED12Q93074 2177 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 A0A1W2PNU3 283 aaPredicted RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 A0A1W2PP11 408 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 PMS2P1A4D2B8 440 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 CST4P01036 141 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 CSN2P05814 226 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 AVPR2P30518 371 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 STARP49675 285 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 RRADP55042 308 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 UCP3P55916 312 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 LPAL2Q16609 132 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 HFEQ30201 348 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 TSPO2Q5TGU0 170 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 TMEM211Q6ICI0 200 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 SPINK14Q6IE38 97 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 RPUSD3Q6P087 351 aaKnown RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 LINC00596Q86U02 117 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 PDZD9Q8IXQ8 264 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 OSR2Q8N2R0 312 aa8.56□□□□□ -1.04
SS18-205ENST00000542420 ZFP62Q8NB50 900 aaPredicted RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 INO80EQ8NBZ0 244 aaPredicted RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 ADAD2Q8NCV1 583 aaKnown RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 APOBEC3DQ96AK3 386 aaPredicted RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 RTBDNQ9BSG5 229 aaPredicted RBP8.56□□□□□ -1.04
SS18-205ENST00000542420 CD46P15529 392 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 ITGA3P26006 1051 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 RAB13P51153 203 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 HGFACQ04756 655 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 PDZK1IP1Q13113 114 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 SFRP5Q5T4F7 317 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 DHRS11Q6UWP2 260 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 TMEM251Q8N6I4 163 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 ABHD3Q8WU67 409 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 PIK3IP1Q96FE7 263 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 SIGLEC12Q96PQ1 595 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 DMRTA2Q96SC8 542 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 CHMP1AQ9HD42 196 aaPredicted RBP8.55□□□□□ -1.04
SS18-205ENST00000542420 GSN-AS1Q9NRJ2 163 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 NECAP2Q9NVZ3 263 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 EHFQ9NZC4 300 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 ANXA10Q9UJ72 324 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 TEX13DA0A0J9YY54 714 aaPredicted RBP8.55□□□□□ -1.04
SS18-205ENST00000542420 NUDT19A8MXV4 375 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms