RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 SNCAP37840 140 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 TLE1Q04724 770 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 C9orf152Q5JTZ5 239 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 ANKRD37Q7Z713 158 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 ST8SIA1Q92185 356 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 S100A13Q99584 98 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 FSCN3Q9NQT6 498 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 PARPBPQ9NWS1 579 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 C1orf123Q9NWV4 160 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 KIAA2026Q5HYC2 2103 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 IGKV1-27A0A075B6S5 117 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 FOXI3A8MTJ6 420 aaPredicted RBP9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 HEXBP07686 556 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 PTGDSP41222 190 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 SULT1A1P50225 295 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 SLC25A47Q6Q0C1 308 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 SGPP2Q8IWX5 399 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 TSTD1Q8NFU3 115 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 EMG1Q92979 244 aaKnown RBP9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 ZNF501Q96CX3 271 aaPredicted RBP9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 GNRHR2Q96P88 292 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 PIGQQ9BRB3 760 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 A0A1W2PR77 199 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 ZNF726A6NNF4 738 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 MTCP1P56278 107 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 RPUSD3Q6P087 351 aaKnown RBP9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 Q6ZPA2 131 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 DOK3Q7L591 496 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 C17orf78Q8N4C9 275 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 SSC4DQ8WTU2 575 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 PARP11Q9NR21 331 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 FBLN5Q9UBX5 448 aa9.04□□□□□ -0.96
CDC42SE1-207ENST00000540998 C10orf142B7Z368 130 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 GEMIN2O14893 280 aaKnown RBP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 IFNA4P05014 189 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 PET100P0DJ07 73 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 RAB5AP20339 215 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 TAS2R46P59540 309 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 POLR2GP62487 172 aaKnown RBP eCLIP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 ZNF239Q16600 458 aaKnown RBP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 HAGHQ16775 308 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 ZNF468Q5VIY5 522 aaPredicted RBP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 FAM89BQ8N5H3 189 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 ZFP62Q8NB50 900 aaPredicted RBP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 NFAM1Q8NET5 270 aaPredicted RBP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 RTN4IP1Q8WWV3 396 aaPredicted RBP9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 RNF122Q9H9V4 155 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 DNAJB11Q9UBS4 358 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 CA14Q9ULX7 337 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 CACNA1EQ15878 2313 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 LMO7DNF2Z398 122 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 HSPB6O14558 160 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 LY86O95711 162 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 ACTBL2Q562R1 376 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 P4HA3Q7Z4N8 544 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 SDHAF3Q9NRP4 125 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 PLEK2Q9NYT0 353 aa9.03□□□□□ -0.96
CDC42SE1-207ENST00000540998 FAM24AA6NFZ4 105 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 CRYM-AS1A6NIL9 109 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 UBE2CO00762 179 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 SCGNO76038 276 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 S100A9P06702 114 aaKnown RBP9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 RUNX1Q01196 453 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 SLC22A25Q6T423 547 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 SKA3Q8IX90 412 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 SLC25A45Q8N413 288 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 TMEM217Q8N7C4 229 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 C15orf54Q8N8G6 183 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 WDSUB1Q8N9V3 476 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 OR6S1Q8NH40 331 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 NTNG2Q96CW9 530 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 OR6C1Q96RD1 312 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 C19orf12Q9NSK7 152 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 ANXA10Q9UJ72 324 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 MEMO1Q9Y316 297 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 STARD10Q9Y365 291 aa9.02□□□□□ -0.96
CDC42SE1-207ENST00000540998 PHF1O43189 567 aaPredicted RBP9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 JTBO76095 146 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 AGAP20933 346 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 CSNK1A1P48729 337 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 ENDOGQ14249 297 aaKnown RBP9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 D2HGDHQ8N465 521 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 ZNF565Q8N9K5 539 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 HPSE2Q8WWQ2 592 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 P4HTMQ9NXG6 502 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 COL5A1P20908 1838 aaPredicted RBP9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 ARPC4-TTLL3A0A0A6YYG9 625 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 IGKV1-12A0A0C4DH73 117 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 H0YL77 283 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 IFNA21P01568 189 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 IGKV1D-12P01611 117 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 ABCA11PQ4W5N1 156 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 NSUN5P2Q63ZY6 315 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 EIF5AL1Q6IS14 154 aaKnown RBP9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 ZNF574Q6ZN55 896 aaPredicted RBP9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 TCEAL3Q969E4 200 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 TP53RKQ96S44 253 aa9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 CDCA3Q99618 268 aaPredicted RBP9.02□□□□□ -0.97
CDC42SE1-207ENST00000540998 DCHS1Q96JQ0 3298 aa9.01□□□□□ -0.97
CDC42SE1-207ENST00000540998 A0A1W2PNV4 684 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms