RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ADI1Q9BV57 179 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 UNKLQ9H9P5 680 aaKnown RBP11.68□□□□□ -0.54
USP28-209ENST00000540925 ZMAT3Q9HA38 289 aaKnown RBP11.68□□□□□ -0.54
USP28-209ENST00000540925 MTCH1Q9NZJ7 389 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 IGHV1-69DA0A0B4J2H0 117 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 MDFIC2A0A1B0GVS7 189 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 RFPL4AA6NLU0 287 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 ANKRD65E5RJM6 399 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 E9PI62 339 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 RFPL4AL1F8VTS6 287 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 F8VVB4 439 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 F8VWA3 439 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 IGHV1-69P01742 117 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 RNASE1P07998 156 aaKnown RBP11.67□□□□□ -0.54
USP28-209ENST00000540925 KLHL22Q53GT1 634 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 GPR157Q5UAW9 335 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 VMO1Q7Z5L0 202 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 ZNF555Q8NEP9 628 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 TRMT10AQ8TBZ6 339 aaKnown RBP11.67□□□□□ -0.54
USP28-209ENST00000540925 RPS4Y2Q8TD47 263 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 TNFRSF14Q92956 283 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 MRPL48Q96GC5 212 aaKnown RBP11.67□□□□□ -0.54
USP28-209ENST00000540925 HHLA2Q9UM44 414 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 SLC7A11Q9UPY5 501 aa11.67□□□□□ -0.54
USP28-209ENST00000540925 FAM230AA0A1W2PPH8 454 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 NXPH2O95156 264 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 ZFPL1O95159 310 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 KNG1P01042 644 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 MT-ND2P03891 347 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 ATF1P18846 271 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 PRDX2P32119 198 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 GABRA2P47869 451 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 MRPL28Q13084 256 aaKnown RBP11.66□□□□□ -0.54
USP28-209ENST00000540925 SLC9A3R2Q15599 337 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 DEFB112Q30KQ8 113 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 TTC23Q5W5X9 447 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 RUSC1-AS1Q66K80 236 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 LAIR2Q6ISS4 152 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 RBMS3Q6XE24 437 aaKnown RBP11.66□□□□□ -0.54
USP28-209ENST00000540925 CNIH3Q8TBE1 160 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 NPRL2Q8WTW4 380 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 FBLIM1Q8WUP2 373 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 FGGYQ96C11 551 aa11.66□□□□□ -0.54
USP28-209ENST00000540925 MYCBPQ99417 103 aaPredicted RBP11.66□□□□□ -0.54
USP28-209ENST00000540925 SEBOXQ9HB31 216 aaPredicted RBP11.66□□□□□ -0.54
USP28-209ENST00000540925 TRBV23-1A0A0A0MS06 115 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 M0R1W7 72 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ZNF737O75373 536 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ALX3O95076 343 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 SERPINA3P01011 423 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 GNAO1P09471 354 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 DCKP27707 260 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 CEBPDP49716 269 aaPredicted RBP11.65□□□□□ -0.54
USP28-209ENST00000540925 RBP2P50120 134 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ETV1P50549 477 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 BAMBIQ13145 260 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 IL18R1Q13478 541 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 CNN3Q15417 329 aaKnown RBP11.65□□□□□ -0.54
USP28-209ENST00000540925 RNF144BQ7Z419 303 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 PIP4P2Q8N4L2 257 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ZNF561Q8N587 486 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ZNF485Q8NCK3 441 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 HAVCR2Q8TDQ0 301 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 GATAD2BQ8WXI9 593 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 RGP1Q92546 391 aaPredicted RBP11.65□□□□□ -0.54
USP28-209ENST00000540925 LHX4Q969G2 390 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 SPSB1Q96BD6 273 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 BORCS8Q96FH0 119 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 CEP19Q96LK0 163 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ELL3Q9HB65 397 aaPredicted RBP11.65□□□□□ -0.54
USP28-209ENST00000540925 NOX4Q9NPH5 578 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 C19orf12Q9NSK7 152 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 ONECUT1Q9UBC0 465 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 DIMT1Q9UNQ2 313 aaKnown RBP11.65□□□□□ -0.54
USP28-209ENST00000540925 HSPE1-MOB4S4R3N1 261 aa11.65□□□□□ -0.54
USP28-209ENST00000540925 TMEM212A6NML5 194 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 H0YAE9 185 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 RNASEK-C17orf49H0YIS7 233 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 RPSAP08865 295 aaKnown RBP11.64□□□□□ -0.55
USP28-209ENST00000540925 NDUFB7P17568 137 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 AZGP1P25311 298 aaKnown RBP11.64□□□□□ -0.55
USP28-209ENST00000540925 XAF1Q6GPH4 301 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 ASPHD2Q6ICH7 369 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 ZNF529Q6P280 563 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 Q6YL49 198 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 SLC25A26Q70HW3 274 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 BATF2Q8N1L9 274 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 DHRSXQ8N5I4 330 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 C11orf42Q8N5U0 333 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 PARP16Q8N5Y8 322 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 ZNF676Q8N7Q3 588 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 TMEM185AQ8NFB2 350 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 CYGBQ8WWM9 190 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 H1FXQ92522 213 aaKnown RBP11.64□□□□□ -0.55
USP28-209ENST00000540925 DUX5Q96PT3 197 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 PDCD1LG2Q9BQ51 273 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 FAM234AQ9H0X4 552 aa11.64□□□□□ -0.55
USP28-209ENST00000540925 CAB39Q9Y376 341 aaPredicted RBP11.64□□□□□ -0.55
USP28-209ENST00000540925 K7N7A8 449 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 SLC1A7O00341 560 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms