RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ACOT7LQ6ZUV0 252 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 CMSS1Q9BQ75 279 aaKnown RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 GPR35Q9HC97 309 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 KIF25Q9UIL4 384 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 FAM96BQ9Y3D0 163 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 OR6C65A6NJZ3 312 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 GSTP1P09211 210 aaKnown RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 SRD5A2P31213 254 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 GSK3AP49840 483 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 MPPED2Q15777 294 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 KCNMB1Q16558 191 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 SLC22A25Q6T423 547 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 MEX3BQ6ZN04 569 aaKnown RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 KCNRGQ8N5I3 272 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 BVESQ8NE79 360 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 BPIFCQ8NFQ6 507 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 OR5AP2Q8NGF4 316 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 MRPL24Q96A35 216 aaKnown RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 MRPS24Q96EL2 167 aaKnown RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 BSCL2Q96G97 398 aaPredicted RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 PCDHB10Q9UN67 800 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 RFNGQ9Y644 331 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 A0A087WZY1 265 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 MTRF1O75570 445 aaKnown RBP14.66□□□□□ -0.06
USP28-208ENST00000540438 OR5H8P0DN80 308 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 RIPPLY1Q0D2K3 151 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 RPUSD3Q6P087 351 aaKnown RBP14.66□□□□□ -0.06
USP28-208ENST00000540438 SULF2Q8IWU5 870 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 ZDHHC22Q8N966 263 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 SUMF1Q8NBK3 374 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 SLAMF9Q96A28 289 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 SGCZQ96LD1 299 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 OR2H1Q9GZK4 316 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 HRH4Q9H3N8 390 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 ZNF442Q9H7R0 627 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 VAMP5O95183 116 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 ONECUT2O95948 504 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 HPP00738 406 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 CD8AP01732 235 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 CCL1P22362 96 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 CPT2P23786 658 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 GPM6AP51674 278 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 MRPS34P82930 218 aaKnown RBP14.66□□□□□ -0.06
USP28-208ENST00000540438 TSC22D1Q15714 1073 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 IAH1Q2TAA2 248 aaPredicted RBP14.66□□□□□ -0.06
USP28-208ENST00000540438 OR10AD1Q8NGE0 317 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 SLC2A8Q9NY64 477 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 V9GYS6 101 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 FIGNL2A6NMB9 653 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 BCL2L11O43521 198 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 NEURL1O76050 574 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 IL2RAP01589 272 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 PRF1P14222 555 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 THBS4P35443 961 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 IGSF11Q5DX21 431 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 ABHD17BQ5VST6 288 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 MED12LQ86YW9 2145 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 SSC4DQ8WTU2 575 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 LIPGQ9Y5X9 500 aa14.66□□□□□ -0.06
USP28-208ENST00000540438 BET1O15155 118 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 SFT2D2O95562 160 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 HOXD4P09016 255 aaPredicted RBP14.65□□□□□ -0.06
USP28-208ENST00000540438 NAT2P11245 290 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 CRYGSP22914 178 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 RBP2P50120 134 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 FAM3AP98173 230 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 FOXO1Q12778 655 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 SNTB1Q13884 538 aaKnown RBP14.65□□□□□ -0.06
USP28-208ENST00000540438 OR1C1Q15619 314 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 ZNF239Q16600 458 aaKnown RBP14.65□□□□□ -0.06
USP28-208ENST00000540438 PLEKHN1Q494U1 663 aaPredicted RBP14.65□□□□□ -0.06
USP28-208ENST00000540438 C17orf78Q8N4C9 275 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 IL22RA1Q8N6P7 574 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 OR56B2PQ8NGI1 322 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 NEK7Q8TDX7 302 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 EMG1Q92979 244 aaKnown RBP14.65□□□□□ -0.06
USP28-208ENST00000540438 SESN1Q9Y6P5 492 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 ACACAQ13085 2346 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 NME2P22392 152 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 HIKESHIQ53FT3 197 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 Q6ZPA2 131 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 OVCH2Q7RTZ1 564 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 PRR18Q8N4B5 295 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 METTL9Q9H1A3 318 aa14.65□□□□□ -0.06
USP28-208ENST00000540438 ESRP2Q9H6T0 727 aaKnown RBP14.65□□□□□ -0.06
USP28-208ENST00000540438 FAM74A7A6NL05 159 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 AGTR1P30556 359 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 FCGR2CP31995 323 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 PIGPP57054 158 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 FAM74A3Q4VXF1 159 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 RPL7L1Q6DKI1 246 aaKnown RBP14.64□□□□□ -0.07
USP28-208ENST00000540438 GCNT2Q8N0V5 402 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 LOC105371267A0A1B0GV96 52 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 GPR31O00270 319 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 TNFSF12O43508 249 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 TPPPO94811 219 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 HAAOP46952 286 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 FGL1Q08830 312 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 NSUN5P2Q63ZY6 315 aa14.64□□□□□ -0.07
USP28-208ENST00000540438 OCSTAMPQ9BR26 566 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms