RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PDLIM4P50479 330 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 KRTAP1-1Q07627 177 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 ZMYND11Q15326 602 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 DDI2Q5TDH0 399 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 ANGPTL5Q86XS5 388 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 NKAIN3Q8N8D7 197 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 SPERTQ8NA61 448 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 OR8S1Q8NH09 359 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 AQP3Q92482 292 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 CEP19Q96LK0 163 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 ZNF488Q96MN9 340 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 CMTM3Q96MX0 182 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 TECTBQ96PL2 329 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 GFI1Q99684 422 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 RTL8AQ9BWD3 113 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 NEK6Q9HC98 313 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 HMG20AQ9NP66 347 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 MYOZ1Q9NP98 299 aaPredicted RBP10.9□□□□□ -0.66
CCDC42-202ENST00000539522 COMMD3Q9UBI1 195 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 ADAM30Q9UKF2 790 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 WIPI2Q9Y4P8 454 aa10.9□□□□□ -0.66
CCDC42-202ENST00000539522 IGKV1-12A0A0C4DH73 117 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.89□□□□□ -0.67
CCDC42-202ENST00000539522 OR5B21A6NL26 309 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 TMEM210A6NLX4 147 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 CLDN25C9JDP6 229 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 RNF223E7ERA6 249 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 MAGEB3O15480 346 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 SULT1B1O43704 296 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 IGKV1D-12P01611 117 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 TFF1P04155 84 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 INHBBP09529 407 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 CALCBP10092 127 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 SLC2A2P11168 524 aaPredicted RBP10.89□□□□□ -0.67
CCDC42-202ENST00000539522 AMY2BP19961 511 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 MPZP25189 248 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 CFPP27918 469 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 CFHR2P36980 270 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 ZP1P60852 638 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 GNG3P63215 75 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 ZNF45Q02386 682 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 ZNF846Q147U1 533 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 CARTPTQ16568 116 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 HFEQ30201 348 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 CLEC2AQ6UVW9 174 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 OR52N4Q8NGI2 321 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 WDFY2Q96P53 400 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 MICU1Q9BPX6 476 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 WDR13Q9H1Z4 485 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 C14orf119Q9NWQ9 140 aa10.89□□□□□ -0.67
CCDC42-202ENST00000539522 FAM230AA0A1W2PPH8 454 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 LRP5LA4QPB2 252 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 NDUFS8O00217 210 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 SLC17A2O00624 439 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 OCMP0CE72 109 aaPredicted RBP10.88□□□□□ -0.67
CCDC42-202ENST00000539522 CD80P33681 288 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 ETV6P41212 452 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 CAPZA1P52907 286 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 SCAND1P57086 179 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 TMEM33P57088 247 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 DSCR9P59020 149 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 ERVK11-1P61568 191 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 LMO4P61968 165 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 MZT1Q08AG7 82 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 CNN3Q15417 329 aaKnown RBP10.88□□□□□ -0.67
CCDC42-202ENST00000539522 SPANXN2Q5MJ10 180 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 C1orf100Q5SVJ3 147 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 HES5Q5TA89 166 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 HAGHLQ6PII5 290 aaPredicted RBP10.88□□□□□ -0.67
CCDC42-202ENST00000539522 C1QL2Q7Z5L3 287 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 BATF2Q8N1L9 274 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 DNAAF1Q8NEP3 725 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 ZNF671Q8TAW3 534 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 ZFAND2BQ8WV99 257 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 ERGIC1Q969X5 290 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 RFT1Q96AA3 541 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 HIST1H2AAQ96QV6 131 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 UQCC2Q9BRT2 126 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 TMUB1Q9BVT8 246 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 REG4Q9BYZ8 158 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 WDR12Q9GZL7 423 aaKnown RBP10.88□□□□□ -0.67
CCDC42-202ENST00000539522 FN3KRPQ9HA64 309 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 PLGRKTQ9HBL7 147 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 TMEM165Q9HC07 324 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 AKIP1Q9NQ31 210 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 MTCH1Q9NZJ7 389 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 STEAP1Q9UHE8 339 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 SPATA2Q9UM82 520 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 NPTNQ9Y639 398 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 ACANP16112 2415 aa10.88□□□□□ -0.67
CCDC42-202ENST00000539522 A0A1B0GW55 424 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 SRRM5B3KS81 715 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 H7C1Q1 480 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 PPIHO43447 177 aaKnown RBP10.87□□□□□ -0.67
CCDC42-202ENST00000539522 AKR7A2O43488 359 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 CSF3P09919 207 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 DUX4L2P0CJ85 424 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 DUX4L3P0CJ86 424 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 DUX4L4P0CJ87 422 aa10.87□□□□□ -0.67
CCDC42-202ENST00000539522 DUX4L5P0CJ88 424 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms