RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	BORCS8	Q96FH0	119 aa		18.95	■□□□□ 0.62
CAPN1-222	ENST00000532285	ZMAT3	Q9HA38	289 aa	Known RBP	18.95	■□□□□ 0.62
CAPN1-222	ENST00000532285	HES4	Q9HCC6	221 aa		18.95	■□□□□ 0.62
CAPN1-222	ENST00000532285	FGF20	Q9NP95	211 aa	Predicted RBP	18.95	■□□□□ 0.62
CAPN1-222	ENST00000532285	ONECUT1	Q9UBC0	465 aa		18.95	■□□□□ 0.62
CAPN1-222	ENST00000532285	MAB21L2	Q9Y586	359 aa		18.95	■□□□□ 0.62
CAPN1-222	ENST00000532285	IGKV1-27	A0A075B6S5	117 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	CLIC3	O95833	236 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	PRDX2	P32119	198 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	ERVK11-1	P61568	191 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	ACTG1	P63261	375 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	ADARB1	P78563	741 aa	Known RBP	18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	ZNF561	Q8N587	486 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	TMEM185A	Q8NFB2	350 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	HAVCR2	Q8TDQ0	301 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	JAM3	Q9BX67	310 aa		18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	SOX21	Q9Y651	276 aa	Predicted RBP	18.94	■□□□□ 0.62
CAPN1-222	ENST00000532285	PRTN3	P24158	256 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	RBP2	P50120	134 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	GBX2	P52951	348 aa	Predicted RBP	18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	ATP1B3	P54709	279 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	OGFRL1	Q5TC84	451 aa	Predicted RBP	18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	VMO1	Q7Z5L0	202 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	CD177	Q8N6Q3	437 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	OR13C3	Q8NGS6	347 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	CNIH3	Q8TBE1	160 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	GATAD2B	Q8WXI9	593 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	LHX4	Q969G2	390 aa		18.93	■□□□□ 0.62
CAPN1-222	ENST00000532285	IGHV1-69D	A0A0B4J2H0	117 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	IRGM	A1A4Y4	181 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	DNAJC9-AS1	A6NH13	148 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	TMEM212	A6NML5	194 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	SLC1A7	O00341	560 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	CASQ2	O14958	399 aa	Predicted RBP	18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	IGHV1-69	P01742	117 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	LIMS3	P0CW19	117 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	LIMS4	P0CW20	117 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	ATF1	P18846	271 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	PRKACB	P22694	351 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	DCK	P27707	260 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	CAPZA1	P52907	286 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	IL18R1	Q13478	541 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	OR10AC1	Q8NH08	325 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	GCDH	Q92947	438 aa	Predicted RBP	18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	CEP19	Q96LK0	163 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	PRDM13	Q9H4Q3	707 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	MTCH1	Q9NZJ7	389 aa		18.92	■□□□□ 0.62
CAPN1-222	ENST00000532285	TRBV23-1	A0A0A0MS06	115 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	IGKV1-9	A0A0C4DH69	117 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285		A0A1W2PQ09	198 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	KNG1	P01042	644 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	CCDC159	P0C7I6	412 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	DEFB112	Q30KQ8	113 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	RUSC1-AS1	Q66K80	236 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	C1orf122	Q6ZSJ8	110 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	BATF2	Q8N1L9	274 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	OR51A4	Q8NGJ6	313 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	OR5AK2	Q8NH90	309 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	SPSB1	Q96BD6	273 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	C1orf147	Q96MC9	270 aa	Predicted RBP	18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	COMMD4	Q9H0A8	199 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	DCLRE1B	Q9H816	532 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	HSPE1-MOB4	S4R3N1	261 aa		18.91	■□□□□ 0.62
CAPN1-222	ENST00000532285	TMEM89	A2RUT3	159 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285		E9PI62	339 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	CLDN34	H7C241	214 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	AZGP1	P25311	298 aa	Known RBP	18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	MTCP1	P56278	107 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	METAP1D	Q6UB28	335 aa	Predicted RBP	18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	LHFPL2	Q6ZUX7	228 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	SLC25A26	Q70HW3	274 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	MKX	Q8IYA7	352 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	ZDHHC16	Q969W1	377 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	SLAMF9	Q96A28	289 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	SLC25A28	Q96A46	364 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	DUX5	Q96PT3	197 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	ELL3	Q9HB65	397 aa	Predicted RBP	18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	NOX4	Q9NPH5	578 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	OR14J1	Q9UGF5	321 aa		18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	CAB39	Q9Y376	341 aa	Predicted RBP	18.9	■□□□□ 0.62
CAPN1-222	ENST00000532285	TRBV2	A0A0J9YWF9	115 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	MDFIC2	A0A1B0GVS7	189 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285		H0YAE9	185 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285		M0R1W7	72 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	ZFPL1	O95159	310 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	CYB5A	P00167	134 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	OCM2	P0CE71	109 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	OCM	P0CE72	109 aa	Predicted RBP	18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	CAPG	P40121	348 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	CEBPD	P49716	269 aa	Predicted RBP	18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	ETV1	P50549	477 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	C12orf54	Q6X4T0	127 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	TMPRSS11A	Q6ZMR5	421 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285		Q8IYB0	196 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285		Q8N7P7	452 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	PDCD1LG2	Q9BQ51	273 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	VCX	Q9H320	206 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	NEK6	Q9HC98	313 aa		18.89	■□□□□ 0.61
CAPN1-222	ENST00000532285	MT-ND2	P03891	347 aa		18.88	■□□□□ 0.61
CAPN1-222	ENST00000532285	RNASE1	P07998	156 aa	Known RBP	18.88	■□□□□ 0.61

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms