RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 GABRA2P47869 451 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 POU3F4P49335 361 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 RBP2P50120 134 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ATP1B3P54709 279 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 MTCP1P56278 107 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 IL24Q13007 206 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ASPHD2Q6ICH7 369 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ACP7Q6ZNF0 438 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 SLC25A26Q70HW3 274 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 PRIMA1Q86XR5 153 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 SERPINA12Q8IW75 414 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 PARP16Q8N5Y8 322 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 DNAAF1Q8NEP3 725 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ANGPTL6Q8NI99 470 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ST8SIA4Q92187 359 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 TMEM106AQ96A25 262 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 OPALINQ96PE5 141 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 GAFA1Q96PS6 74 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 OR5M11Q96RB7 305 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 NRIP2Q9BQI9 281 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 CDCA4Q9BXL8 241 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ZCCHC4Q9H5U6 513 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 TAS2R4Q9NYW5 299 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 MTCH1Q9NZJ7 389 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 OPN4Q9UHM6 478 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 POLDIP2Q9Y2S7 368 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 IGHV2-70DA0A0C4DH43 119 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 J3QLI3 93 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 RGS10O43665 173 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 SULT1B1O43704 296 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 NXPH2O95156 264 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 FAM157CP0CG43 387 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 SRD5A1P18405 259 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 CELP19835 753 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 CEBPDP49716 269 aaPredicted RBP11.09□□□□□ -0.63
VPS28-210ENST00000529182 NPY4RP50391 375 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 TAS2R43P59537 309 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 ERVK11-1P61568 191 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 RPS11P62280 158 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS28-210ENST00000529182 IRF3Q14653 427 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 DGUOKQ16854 277 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 ATPAF1Q5TC12 328 aaPredicted RBP11.09□□□□□ -0.63
VPS28-210ENST00000529182 RNLSQ5VYX0 342 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 CRIP3Q6Q6R5 217 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 ZNF788Q6ZQV5 615 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 LHFPL2Q6ZUX7 228 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 SLC36A1Q7Z2H8 476 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 CD177Q8N6Q3 437 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 OR51A2Q8NGJ7 313 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 OR5D18Q8NGL1 313 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 OR5D14Q8NGL3 314 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 RAB40AQ8WXH6 277 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 DACT3Q96B18 629 aaPredicted RBP11.09□□□□□ -0.63
VPS28-210ENST00000529182 SPSB1Q96BD6 273 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 NUDT16L1Q9BRJ7 211 aaKnown RBP11.09□□□□□ -0.63
VPS28-210ENST00000529182 MND1Q9BWT6 205 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 CCDC90BQ9GZT6 254 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 HES4Q9HCC6 221 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 METRNQ9UJH8 293 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 ZNF222Q9UK12 451 aa11.09□□□□□ -0.63
VPS28-210ENST00000529182 LSM2Q9Y333 95 aaKnown RBP11.09□□□□□ -0.63
VPS28-210ENST00000529182 TRBV5-5A0A0J9YX44 114 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 A0A1W2PPK0 400 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 NKX6-3A6NJ46 265 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 RFPL4AA6NLU0 287 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 RFPL4AL1F8VTS6 287 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 SIGLEC5O15389 551 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 ANGPTL7O43827 346 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 HCKP08631 526 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 CALCBP10092 127 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 GATA3P23771 443 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 MAP2K4P45985 399 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 NPBWR2P48146 333 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 MED22Q15528 200 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 SMIM21Q3B7S5 101 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 BTN2A1Q7KYR7 527 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 CEP19Q96LK0 163 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 NKX3-1Q99801 234 aaPredicted RBP11.08□□□□□ -0.64
VPS28-210ENST00000529182 RASL12Q9NYN1 266 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 IL36RNQ9UBH0 155 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 OR14J1Q9UGF5 321 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 MAB21L2Q9Y586 359 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 DOCK11Q5JSL3 2073 aa11.08□□□□□ -0.64
VPS28-210ENST00000529182 IGKV1-12A0A0C4DH73 117 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 KIR2DS1A0A191URI9 304 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 DENRO43583 198 aaKnown RBP11.07□□□□□ -0.64
VPS28-210ENST00000529182 NDUFB3O43676 98 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 IGKV1D-12P01611 117 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 CD2P06729 351 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 ACAA1P09110 424 aaPredicted RBP11.07□□□□□ -0.64
VPS28-210ENST00000529182 RAB3AP20336 220 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 BCL3P20749 454 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 IL13RA1P78552 427 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 PAX8Q06710 450 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 PDZK1IP1Q13113 114 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 SPHARQ15513 63 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 YIF1BQ5BJH7 314 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 RBM48Q5RL73 367 aaKnown RBP11.07□□□□□ -0.64
VPS28-210ENST00000529182 ZNF529Q6P280 563 aa11.07□□□□□ -0.64
VPS28-210ENST00000529182 BTNL3Q6UXE8 466 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms