RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CEACAM16Q2WEN9 425 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 CNTNAP3BQ96NU0 1288 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 TECTBQ96PL2 329 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 CNTNAP3Q9BZ76 1288 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 MMP26Q9NRE1 261 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 SLC7A11Q9UPY5 501 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 C19orf67A6NJJ6 358 aa18.45■□□□□ 0.54
VPS28-205ENST00000526204 FUT6P51993 359 aa18.45■□□□□ 0.54
VPS28-205ENST00000526204 CPNE4Q96A23 557 aaPredicted RBP18.45■□□□□ 0.54
VPS28-205ENST00000526204 SAT2Q96F10 170 aaPredicted RBP18.45■□□□□ 0.54
VPS28-205ENST00000526204 WNT5BQ9H1J7 359 aa18.45■□□□□ 0.54
VPS28-205ENST00000526204 BCO1Q9HAY6 547 aa18.45■□□□□ 0.54
VPS28-205ENST00000526204 LPAR3Q9UBY5 353 aa18.45■□□□□ 0.54
VPS28-205ENST00000526204 KCNIP3Q9Y2W7 256 aa18.45■□□□□ 0.54
VPS28-205ENST00000526204 ZNF850A8MQ14 1090 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 TOR1AO14656 332 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 FCGR3AP08637 254 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 RPS18P62269 152 aaKnown RBP18.44■□□□□ 0.54
VPS28-205ENST00000526204 SMCO1Q147U7 214 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 WIPI1Q5MNZ9 446 aaPredicted RBP18.44■□□□□ 0.54
VPS28-205ENST00000526204 FAM122CQ6P4D5 195 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 SLC23A3Q6PIS1 610 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 IL34Q6ZMJ4 242 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 OSR2Q8N2R0 312 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 SVBPQ8N300 66 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 GPR35Q9HC97 309 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 PRDM6Q9NQX0 595 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 TUBD1Q9UJT1 453 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 hCG_38984A0A1B0GV85 526 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 PLATP00750 562 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 SERPINA7P05543 415 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 PATE4P0C8F1 98 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 TCN2P20062 427 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 CYB561P49447 251 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 C6orf15Q6UXA7 325 aaPredicted RBP18.44■□□□□ 0.54
VPS28-205ENST00000526204 ESX1Q8N693 406 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 ADAMTS17Q8TE56 1095 aa18.44■□□□□ 0.54
VPS28-205ENST00000526204 TSNAXQ99598 290 aaKnown RBP18.44■□□□□ 0.54
VPS28-205ENST00000526204 ZNF705EA8MWA4 302 aaPredicted RBP18.43■□□□□ 0.54
VPS28-205ENST00000526204 MSTNO14793 375 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 CYTIPO60759 359 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 HKR1P10072 659 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 ZNF708P17019 499 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 CTRB1P17538 263 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 FAM3AP98173 230 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 NRN1LQ496H8 165 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 PDSS1Q5T2R2 415 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 CTRB2Q6GPI1 263 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 SULT4A1Q9BR01 284 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 OR2S2Q9NQN1 319 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 LINC01387J3KSC0 135 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 SIGLEC5O15389 551 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 XRCC2O43543 280 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 FARS2O95363 451 aaKnown RBP18.43■□□□□ 0.54
VPS28-205ENST00000526204 PDGFBP01127 241 aaPredicted RBP18.43■□□□□ 0.54
VPS28-205ENST00000526204 ACP1P24666 158 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 GDF1P27539 372 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 RRADP55042 308 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 SIGLEC14Q08ET2 396 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 PDZK1IP1Q13113 114 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 OR8B8Q15620 311 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 OR5T2Q8NGG2 359 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 POM121Q96HA1 1249 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 TAF9BQ9HBM6 251 aa18.43■□□□□ 0.54
VPS28-205ENST00000526204 ZNF629Q9UEG4 869 aaPredicted RBP18.43■□□□□ 0.54
VPS28-205ENST00000526204 ABCD4O14678 606 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 DEDDO75618 318 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 ACTL6AO96019 429 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 ZNF728P0DKX0 622 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 PIGPP57054 158 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 ZNF92Q03936 586 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 TMEM200AQ86VY9 491 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 OR10AD1Q8NGE0 317 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 TMEM45BQ96B21 275 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 ZPBPQ9BS86 351 aa18.42■□□□□ 0.54
VPS28-205ENST00000526204 ZNF816-ZNF321PA0A0X1KG74 233 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 K7EPK0 472 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 GEMIN2O14893 280 aaKnown RBP18.41■□□□□ 0.54
VPS28-205ENST00000526204 CST4P01036 141 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 RPL12P30050 165 aaKnown RBP18.41■□□□□ 0.54
VPS28-205ENST00000526204 OPRM1P35372 400 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 ARHGDIBP52566 201 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 GFRA1P56159 465 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 CLDN15P56746 228 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 ZNF169Q14929 603 aaPredicted RBP18.41■□□□□ 0.54
VPS28-205ENST00000526204 ABCA11PQ4W5N1 156 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 GGNBP1Q5YKI7 109 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 SKA3Q8IX90 412 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 FBXL14Q8N1E6 418 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 FAM71E2Q8N5Q1 922 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 CT55Q8WUE5 264 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 GALNT14Q96FL9 552 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 SMIM8Q96KF7 97 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 DEPPQ9NTK1 212 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 ST3GAL6Q9Y274 331 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 KIAA1549Q9HCM3 1950 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 IGKV1-12A0A0C4DH73 117 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 IGKV1D-12P01611 117 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 PJVKQ0ZLH3 352 aa18.41■□□□□ 0.54
VPS28-205ENST00000526204 C10orf91Q5T1B1 145 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms