RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PGA5P0DJD9 388 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 DLX1P56177 255 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 EDDM3BP56851 147 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 DYNC1I2Q13409 638 aaKnown RBP9.41□□□□□ -0.9
COL6A3-213ENST00000493475 CNN3Q15417 329 aaKnown RBP9.41□□□□□ -0.9
COL6A3-213ENST00000493475 DNAL1Q4LDG9 190 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 SLX4IPQ5VYV7 408 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 TMEM200BQ69YZ2 307 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 ASRGL1Q7L266 308 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 SPATA24Q86W54 205 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 NDUFA11Q86Y39 141 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 ENTHD1Q8IYW4 607 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 C11orf44Q8N8P7 122 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 CCDC197Q8NCU1 140 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 CCDC54Q8NEL0 328 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 PPP1R35Q8TAP8 253 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 CFHR4Q92496 578 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 SGCDQ92629 289 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 TEAD3Q99594 435 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 PKIBQ9C010 78 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 SNX5Q9Y5X3 404 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 hADV38S2A0JD32 116 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 PSMD9O00233 223 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 ALX3O95076 343 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 KRT8P05787 483 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 AZGP1P25311 298 aaKnown RBP9.4□□□□□ -0.9
COL6A3-213ENST00000493475 BMXP51813 675 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 MS4A2Q01362 244 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 FLOT2Q14254 428 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 ZNF322Q6U7Q0 402 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-213ENST00000493475 GID4Q8IVV7 300 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 Q8IYB0 196 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 ADGRG5Q8IZF4 528 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 OR4M1Q8NGD0 313 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 CANT1Q8WVQ1 401 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 RORBQ92753 470 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 R3HDM4Q96D70 268 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 NRBF2Q96F24 287 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 NRIP2Q9BQI9 281 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 THTPAQ9BU02 230 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 KRT84Q9NSB2 600 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 SLC22A13Q9Y226 551 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 TCF19Q9Y242 345 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 KLHDC2Q9Y2U9 406 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 ZNF281Q9Y2X9 895 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 SIGLEC9Q9Y336 463 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 PCDHGB5Q9Y5G0 923 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 R4GMQ9 66 aa9.4□□□□□ -0.9
COL6A3-213ENST00000493475 G3V4G9 280 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 CLIC3O95833 236 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 TFF1P04155 84 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 OCM2P0CE71 109 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 OCMP0CE72 109 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF728P0DKX0 622 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 PIPP12273 146 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 SLC2A5P22732 501 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 CRISP1P54107 249 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 CXCR4P61073 352 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 MEF2CQ06413 473 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 IL24Q13007 206 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 BEAN1Q3B7T3 259 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 NSUN5P1Q3KNT7 163 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 KPRPQ5T749 579 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 SAMD5Q5TGI4 173 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 MINOS1Q5TGZ0 78 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF782Q6ZMW2 699 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 MEPCEQ7L2J0 689 aaKnown RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 CD177Q8N6Q3 437 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 BBS1Q8NFJ9 593 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 MRAPQ8TCY5 172 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 AJUBAQ96IF1 538 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF714Q96N38 554 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 FGF23Q9GZV9 251 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-213ENST00000493475 NEK6Q9HC98 313 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 GPR173Q9NS66 373 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 NECAP2Q9NVZ3 263 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 TAS2R1Q9NYW7 299 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 OR52A1Q9UKL2 312 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 FOXJ3Q9UPW0 622 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 MINOS1-NBL1R4GNA1 71 aa9.39□□□□□ -0.91
COL6A3-213ENST00000493475 FAM230AA0A1W2PPH8 454 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 PQLC2LA1A4F0 135 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 FUOMA2VDF0 154 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 MEGF11A6BM72 1044 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 C17orf98A8MV24 154 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 K7N7A8 449 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 GYG2O15488 501 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 TTRP02766 147 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 CCL3L1P16619 93 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 MPZP25189 248 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 PEX2P28328 305 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 ATP6V1E1P36543 226 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 VDAC2P45880 294 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-213ENST00000493475 DYNLT3P51808 116 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 HCCSP53701 268 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 SLC34A1Q06495 639 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 SSX2Q16385 188 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 PLA1AQ53H76 456 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 NXNL2Q5VZ03 156 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 OR52W1Q6IF63 320 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms