RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ABCD2Q9UBJ2 740 aa11.29□□□□□ -0.6
PRPF40A-211ENST00000493468 ZNF737O75373 536 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 GSTT1P30711 240 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 RRM2P31350 389 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 PLCXD3Q63HM9 321 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 GLYATQ6IB77 296 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 HACD2Q6Y1H2 254 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 RASSF6Q6ZTQ3 369 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 ZNF573Q86YE8 665 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 ZNF676Q8N7Q3 588 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 RCHY1Q96PM5 261 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 TMEM133Q9H2Q1 129 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 DPM3Q9P2X0 92 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 NKX1-2Q9UD57 310 aaPredicted RBP11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 OR14J1Q9UGF5 321 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 HHLA2Q9UM44 414 aa11.28□□□□□ -0.6
PRPF40A-211ENST00000493468 hADV38S2A0JD32 116 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 ACOD1A6NK06 481 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 NUDT19A8MXV4 375 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 IFNGP01579 166 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 LYNP07948 512 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 MPZP25189 248 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 HAAOP46952 286 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 NUDT2P50583 147 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 EDDM3BP56851 147 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 C9orf66Q5T8R8 295 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 C18orf65Q6ZTR6 163 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 GDPD3Q7L5L3 318 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 TRPM8Q7Z2W7 1104 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 OR8H2Q8N162 312 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 LINC00471Q8N535 108 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 COMMD1Q8N668 190 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF454Q8N9F8 522 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 ASCC1Q8N9N2 400 aaKnown RBP11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 KLHL30-AS1Q8NEE0 82 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 OTOSQ8NHW6 89 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 CHPT1Q8WUD6 406 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 STMN2Q93045 179 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 PYURFQ96I23 114 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 KRTAP17-1Q9BYP8 105 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 PALMDQ9NP74 551 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 GAR1Q9NY12 217 aaKnown RBP11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 SLC22A13Q9Y226 551 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 LINC00312Q9Y6C7 94 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 HYDINQ4G0P3 5121 aa11.27□□□□□ -0.61
PRPF40A-211ENST00000493468 SH2D7A6NKC9 451 aaPredicted RBP11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 RIIAD1A6NNX1 92 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF3P17036 446 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 CD24P25063 80 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 OR3A4PP47883 348 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 LUMP51884 338 aaPredicted RBP11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 ERVK11-1P61568 191 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 BDH1Q02338 343 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 RIPPLY1Q0D2K3 151 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 SAMD4BQ5PRF9 694 aaKnown RBP11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF684Q5T5D7 378 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 MOB3CQ70IA8 216 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF329Q86UD4 541 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF695Q8IW36 515 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 OR2T33Q8NG76 320 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 OR4Q3Q8NH05 313 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 BCAS4Q8TDM0 211 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 BTBD10Q9BSF8 475 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 TSSK6Q9BXA6 273 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 GORASP2Q9H8Y8 452 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 IL1RAPQ9NPH3 570 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 CMC2Q9NRP2 79 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 DNAJB9Q9UBS3 223 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 ENPP5Q9UJA9 477 aa11.26□□□□□ -0.61
PRPF40A-211ENST00000493468 SORL1Q92673 2214 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 MEX3AA1L020 520 aaKnown RBP11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 GMNNO75496 209 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 IGLV3-1P01715 115 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 FABP3P05413 133 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 HMGA2P52926 109 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 SNAPC1Q16533 368 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 C9orf152Q5JTZ5 239 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 RTN4RL2Q86UN3 420 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 OR9Q2Q8NGE9 314 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 ZNF596Q8TC21 504 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 MCUR1Q96AQ8 359 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 RAX2Q96IS3 184 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 MYLK2Q9H1R3 596 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 EFCAB1Q9HAE3 211 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 PAPOLBQ9NRJ5 636 aaKnown RBP11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 MOB4Q9Y3A3 225 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 HSPE1-MOB4S4R3N1 261 aa11.25□□□□□ -0.61
PRPF40A-211ENST00000493468 PQLC2LA1A4F0 135 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 LEUTXA8MZ59 168 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 HMGB1P1B2RPK0 211 aaPredicted RBP11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 CCL24O00175 119 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 GSC2O15499 205 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 KRT36O76013 467 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 NRASP01111 189 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 IGLV1-47P01700 117 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 COX4I1P13073 169 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 ECI1P42126 302 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 TMEM42Q69YG0 159 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 OR5M8Q8NGP6 311 aa11.24□□□□□ -0.61
PRPF40A-211ENST00000493468 CREB3L1Q96BA8 519 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms