RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RTBDNQ9BSG5 229 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 PAPOLGQ9BWT3 736 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 RRP8O43159 456 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 PLP2Q04941 152 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 FGL1Q08830 312 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 BAMBIQ13145 260 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 IGF2-ASQ6U949 168 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 C3P1Q6ZMU1 363 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 KCTD9Q7L273 389 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 OR10AD1Q8NGE0 317 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 SEC22AQ96IW7 307 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 CITED4Q96RK1 184 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 ARL6Q9H0F7 186 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 STARD10Q9Y365 291 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 CELSR3Q9NYQ7 3312 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 PQLC2LA1A4F0 135 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 NGFP01138 241 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 PI3P19957 117 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 PRDX4Q13162 271 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 CLLU1Q5K131 121 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 IGFL2Q6UWQ7 119 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 ZNF611Q8N823 705 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 BCL2L2Q92843 193 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 FGF23Q9GZV9 251 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 ST3GAL6Q9Y274 331 aa18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 EP300Q09472 2414 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-208ENST00000492980 TNRC6AQ8NDV7 1962 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 TCF15Q12870 199 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 MFFQ9GZY8 342 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 EDARQ9UNE0 448 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 RP2O75695 350 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 SFT2D2O95562 160 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 IGHG3P01860 377 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 CLN3Q13286 438 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 NSUN5P2Q63ZY6 315 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 SLC25A26Q70HW3 274 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 DPPA2Q7Z7J5 298 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 HPSE2Q8WWQ2 592 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 CMSS1Q9BQ75 279 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 PCDHB16Q9NRJ7 776 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 ANXA10Q9UJ72 324 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 AUP1Q9Y679 476 aa18.19■□□□□ 0.5
CCDC88B-208ENST00000492980 FAM25EA8MYX2 175 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 LEUTXA8MZ59 168 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 CST4P01036 141 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 DTYMKP23919 212 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 RBM11P57052 281 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 ARPC4P59998 168 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 SUPT4H1P63272 117 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 TMEM65Q6PI78 240 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 CLEC18BQ6UXF7 455 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 WBP1Q96G27 269 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 GMPPAQ96IJ6 420 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 COMMD9Q9P000 198 aa18.18■□□□□ 0.5
CCDC88B-208ENST00000492980 FCGR3AP08637 254 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 SLC25A4P12235 298 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 SURF2Q15527 256 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 C11orf87Q6NUJ2 197 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 ZNF546Q86UE3 836 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 ZDHHC23Q8IYP9 409 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 PPP1R1CQ8WVI7 109 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 PCNPQ8WW12 178 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 DYRK2Q92630 601 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 GLRA1P23415 457 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 APLNRP35414 380 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 WNT5AP41221 380 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 NPBWR2P48146 333 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 DAZAP2Q15038 168 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 SLC9A3R2Q15599 337 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 NHLRC3Q5JS37 347 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 BRICD5Q6PL45 260 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 P4HA3Q7Z4N8 544 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 CLCF1Q9UBD9 225 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 MED12LQ86YW9 2145 aa18.17■□□□□ 0.5
CCDC88B-208ENST00000492980 PDCD6O75340 191 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 CEACAM21Q3KPI0 293 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 LRRC37A5PQ49AS3 106 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 GSG1LQ6UXU4 331 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 Q8NFD4 153 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 NANOS1Q8WY41 292 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 GSX2Q9BZM3 304 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 OPA3Q9H6K4 179 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 ZNF629Q9UEG4 869 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 A0A0B4J2A0 478 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 RPS2P15880 293 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 OPRM1P35372 400 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 SERPINF1P36955 418 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 MDP1Q86V88 176 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 ZNF75AQ96N20 296 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 ZNF2Q9BSG1 426 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 FAM86C1Q9NVL1 165 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 SHPKQ9UHJ6 478 aa18.16■□□□□ 0.5
CCDC88B-208ENST00000492980 PRR33A8MZF0 331 aa18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 EEF1E1-BLOC1S5C9J1V9 151 aa18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 GPM6AP51674 278 aa18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 AP2S1P53680 142 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 RAB14P61106 215 aa18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 PDCD1Q15116 288 aa18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 ESCO2Q56NI9 601 aa18.15■□□□□ 0.5
CCDC88B-208ENST00000492980 ZNF660Q6AZW8 331 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms