RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ASCL4Q6XD76 172 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 LRRC75A-AS1Q8N1F1 130 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 BATF2Q8N1L9 274 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 GCSAMQ8N6F7 178 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 ZNF525Q8N782 197 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 POC1AQ8NBT0 407 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 PXT1Q8NFP0 134 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 OR6M1Q8NGM8 313 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 DGCR14Q96DF8 476 aaKnown RBP10.3□□□□□ -0.76
SDC1-206ENST00000482879 CEP19Q96LK0 163 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 METTL9Q9H1A3 318 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 CHODLQ9H9P2 273 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 SMURF1Q9HCE7 757 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 MYOZ1Q9NP98 299 aaPredicted RBP10.3□□□□□ -0.76
SDC1-206ENST00000482879 STEAP1Q9UHE8 339 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 PRRC2AP48634 2157 aaKnown RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 CCDC168Q8NDH2 2452 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 A6NHS1 94 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 SRRM5B3KS81 715 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 CLDN25C9JDP6 229 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 ZNF701M0R085 212 aaPredicted RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 AIPO00170 330 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 WNT9BO14905 357 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 PPIHO43447 177 aaKnown RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 NOS1APO75052 506 aaPredicted RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 KDM4BO94953 1096 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 NXPH2O95156 264 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 ZNF205O95201 554 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 HTR3BO95264 441 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 SLC2A2P11168 524 aaPredicted RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 EGR1P18146 543 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 GLRA1P23415 457 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 CD80P33681 288 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 RANBP1P43487 201 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 NPBWR2P48146 333 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 CLDN12P56749 244 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 TMEM33P57088 247 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 HOXA4Q00056 320 aaPredicted RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 SLC22A6Q4U2R8 563 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 IDNKQ5T6J7 187 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 FAM166AQ6J272 317 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 PEG10Q86TG7 708 aaKnown RBP10.29□□□□□ -0.76
SDC1-206ENST00000482879 OR10K1Q8NGX5 313 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 TBC1D15Q8TC07 691 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 SLC25A28Q96A46 364 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 SLC25A46Q96AG3 418 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 NRIP2Q9BQI9 281 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 WDR13Q9H1Z4 485 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 BATF3Q9NR55 127 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 RASL12Q9NYN1 266 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 DAPK2Q9UIK4 370 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 NPTNQ9Y639 398 aa10.29□□□□□ -0.76
SDC1-206ENST00000482879 PPIAL4EA0A075B759 164 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 A0A0B4J203 849 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 PPIAL4DF5H284 164 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 F8VVB4 439 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 F8VWA3 439 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 BPNT1O95861 308 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 CSTBP04080 98 aaKnown RBP10.28□□□□□ -0.76
SDC1-206ENST00000482879 SFTPBP07988 381 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 CSF3P09919 207 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 UBBP0CG47 229 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 PPIAL4FP0DN26 164 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 CALCBP10092 127 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 SERPINA2P20848 420 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 RORCP51449 518 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 ERVK11-1P61568 191 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 GPR176Q14439 515 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 FOXB2Q5VYV0 432 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 SFRP4Q6FHJ7 346 aaPredicted RBP10.28□□□□□ -0.76
SDC1-206ENST00000482879 CLEC2AQ6UVW9 174 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 ACP7Q6ZNF0 438 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 CROCCP3Q8IVE0 287 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 Q8IYB0 196 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 FAM58AQ8N1B3 248 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 C19orf18Q8NEA5 215 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 DEFB108BQ8NET1 73 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 OR51D1Q8NGF3 324 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 RAB1CQ92928 201 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 EMG1Q92979 244 aaKnown RBP10.28□□□□□ -0.76
SDC1-206ENST00000482879 FAM3DQ96BQ1 224 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 SEH1LQ96EE3 360 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 TIMD4Q96H15 378 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 RHOFQ9HBH0 211 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 PCDHB16Q9NRJ7 776 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 RBFOX1Q9NWB1 397 aaKnown RBP10.28□□□□□ -0.76
SDC1-206ENST00000482879 IL36GQ9NZH8 169 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 DNAJB11Q9UBS4 358 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 GHRLQ9UBU3 117 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 PPIAL4AQ9Y536 164 aa10.28□□□□□ -0.76
SDC1-206ENST00000482879 ASH1LQ9NR48 2969 aaKnown RBP10.28□□□□□ -0.76
SDC1-206ENST00000482879 MED13LQ71F56 2210 aa10.27□□□□□ -0.76
SDC1-206ENST00000482879 IGHV3OR15-7A0A075B7D8 119 aa10.27□□□□□ -0.77
SDC1-206ENST00000482879 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.27□□□□□ -0.77
SDC1-206ENST00000482879 LGALS8O00214 317 aa10.27□□□□□ -0.77
SDC1-206ENST00000482879 ZNF780AO75290 641 aaPredicted RBP10.27□□□□□ -0.77
SDC1-206ENST00000482879 ARSBP15848 533 aa10.27□□□□□ -0.77
SDC1-206ENST00000482879 PRKACAP17612 351 aa10.27□□□□□ -0.77
SDC1-206ENST00000482879 CFPP27918 469 aa10.27□□□□□ -0.77
SDC1-206ENST00000482879 GPR6P46095 362 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms