RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ZNF766Q5HY98 468 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 SIGIRRQ6IA17 410 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 HSD17B13Q7Z5P4 300 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-220ENST00000477528 OR2H1Q9GZK4 316 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 VSIG4Q9Y279 399 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 LHFPL6Q9Y693 200 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 RAB5CP51148 216 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 FNDC7Q5VTL7 733 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 GPR35Q9HC97 309 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 PCDHB10Q9UN67 800 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 A0A1W2PPV4 95 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 C21orf140B9A014 251 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 TIAF1O95411 115 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 H2AFB1P0C5Y9 115 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 MOGAT2Q3SYC2 334 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 LIN7CQ9NUP9 197 aaKnown RBP12.86□□□□□ -0.35
HDAC6-220ENST00000477528 PPP1R3CQ9UQK1 317 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 E9PQ18 207 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 RBMS3Q6XE24 437 aaKnown RBP12.86□□□□□ -0.35
HDAC6-220ENST00000477528 IL34Q6ZMJ4 242 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 A0A0B4J293 547 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 EFSO43281 561 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 TRAF3IP2O43734 574 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-220ENST00000477528 LMX1BO60663 402 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 PRSS12P56730 875 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 SPATA46Q5T0L3 261 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 GGNBP1Q5YKI7 109 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 PROCRQ9UNN8 238 aa12.86□□□□□ -0.35
HDAC6-220ENST00000477528 RCL1Q9Y2P8 373 aaKnown RBP12.86□□□□□ -0.35
HDAC6-220ENST00000477528 IGHV3-64DA0A0J9YX35 117 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 C17orf112F2Z3M2 114 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 DMWDQ09019 674 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 EDDM3AQ14507 147 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 BRICD5Q6PL45 260 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 HOGA1Q86XE5 327 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 Q8IYB0 196 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 OR5T1Q8NG75 326 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 SFT2D1Q8WV19 159 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 SLC39A9Q9NUM3 307 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 UFSP2Q9NUQ7 469 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 KCNK7Q9Y2U2 307 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 HS3ST3B1Q9Y662 390 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 ALDH3B1P43353 468 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 LPAR5Q9H1C0 372 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 NPDC1Q9NQX5 325 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-220ENST00000477528 AK3Q9UIJ7 227 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 ADAD2Q8NCV1 583 aaKnown RBP12.85□□□□□ -0.35
HDAC6-220ENST00000477528 OR5M9Q8NGP3 310 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 PRELID3BQ9Y3B1 194 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 RAB27BO00194 218 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 CXCL2P19875 107 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 PCOLCEQ15113 449 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 PDLIM3Q53GG5 364 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-220ENST00000477528 ST7LQ8TDW4 575 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 ABHD3Q8WU67 409 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 RAB39BQ96DA2 213 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 MAGT1Q9H0U3 335 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 NARFLQ9H6Q4 476 aa12.85□□□□□ -0.35
HDAC6-220ENST00000477528 ARID1AO14497 2285 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 CD37P11049 281 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 PTGER4P35408 488 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 EDDM3BP56851 147 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 OR1J1Q8NGS3 322 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 OR10Z1Q8NGY1 313 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 OR4A16Q8NH70 328 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 AQP3Q92482 292 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 CXorf58Q96LI9 332 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 ZNF75AQ96N20 296 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 NIPSNAP3BQ9BS92 247 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 RHOFQ9HBH0 211 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 BRWD1Q9NSI6 2320 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 ACTL6BO94805 426 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 LIMK1P53667 647 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 PDZK1IP1Q13113 114 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 ZNF718Q3SXZ3 478 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 VAX1Q5SQQ9 334 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 DCAF12L2Q5VW00 463 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 OR2T2Q6IF00 324 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 RPUSD3Q6P087 351 aaKnown RBP12.84□□□□□ -0.35
HDAC6-220ENST00000477528 SEZ6L2Q6UXD5 910 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 PLXNA2O75051 1894 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 SLC25A4P12235 298 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 BAXQ07812 192 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 LYPD8Q6UX82 237 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 FAM58AQ8N1B3 248 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 OR11H4Q8NGC9 324 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 PLEKHA3Q9HB20 300 aa12.84□□□□□ -0.35
HDAC6-220ENST00000477528 RPS10-NUDT3A0A1W2PQS6 291 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 CCL2P13500 99 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 RPS10P46783 165 aaKnown RBP12.83□□□□□ -0.35
HDAC6-220ENST00000477528 GABRA4P48169 554 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 TAS2R30P59541 319 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 ZNF345Q14585 488 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 TUSC5Q8IXB3 177 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 TMEM104Q8NE00 496 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 SDSLQ96GA7 329 aa12.83□□□□□ -0.35
HDAC6-220ENST00000477528 TRAV17A0A0B4J275 112 aa12.83□□□□□ -0.36
HDAC6-220ENST00000477528 OR5B21A6NL26 309 aa12.83□□□□□ -0.36
HDAC6-220ENST00000477528 IFNA4P05014 189 aa12.83□□□□□ -0.36
HDAC6-220ENST00000477528 OR5AC1P0C628 307 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms