RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 UBE2E1P51965 193 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 OLFML2AQ68BL7 652 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 RDH10Q8IZV5 341 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 LINC01006Q8NI28 216 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 NPRL2Q8WTW4 380 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 RBM4BQ9BQ04 359 aaKnown RBP11.51□□□□□ -0.57
UPF3A-204ENST00000475218 AASSQ9UDR5 926 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 DSCAML1Q8TD84 2053 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 TRBV23-1A0A0A0MS06 115 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 CLPSL1A2RUU4 121 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 A6NHS1 94 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 EI24O14681 340 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 ENTPD6O75354 484 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 PAX6P26367 422 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 RPL15P61313 204 aaKnown RBP11.5□□□□□ -0.57
UPF3A-204ENST00000475218 GUCA2AQ02747 115 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 SMIM21Q3B7S5 101 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 TP53I3Q53FA7 332 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 TMEM200BQ69YZ2 307 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 Q6ZSV7 163 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 TRMT10AQ8TBZ6 339 aaKnown RBP11.5□□□□□ -0.57
UPF3A-204ENST00000475218 HRASLS5Q96KN8 279 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 MBOAT4Q96T53 435 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 CITED1Q99966 193 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 BEX1Q9HBH7 125 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 USE1Q9NZ43 259 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 MTCH1Q9NZJ7 389 aa11.5□□□□□ -0.57
UPF3A-204ENST00000475218 MEIOCA2RUB1 952 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 CIB2O75838 187 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 KNG1P01042 644 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 FBP1P09467 338 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 CCL3L1P16619 93 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 DLX6P56179 175 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 PROK1P58294 105 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 NANOS3P60323 173 aaKnown RBP11.49□□□□□ -0.57
UPF3A-204ENST00000475218 IL24Q13007 206 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 TMED1Q13445 227 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ZNF273Q14593 569 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 MKXQ8IYA7 352 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 FAM185AQ8N0U4 392 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ZNF561Q8N587 486 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ZSCAN4Q8NAM6 433 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-204ENST00000475218 OR4M1Q8NGD0 313 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 PKIBQ9C010 78 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 FAM96BQ9Y3D0 163 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 IGKV1-9A0A0C4DH69 117 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 A0A1B0GUS0 222 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 LOC107986453A0A1B0GWG9 222 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 FAM230AA0A1W2PPH8 454 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 SYT7O43581 403 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ZNF737O75373 536 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 NXPH2O95156 264 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 CRYBA1P05813 215 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ACSM1Q08AH1 577 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ZIK1Q3SY52 487 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-204ENST00000475218 SLC25A30Q5SVS4 291 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 NCR3LG1Q68D85 454 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 ADAT3Q96EY9 351 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-204ENST00000475218 CHST5Q9GZS9 411 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 VCXQ9H320 206 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 VPREB3Q9UKI3 123 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 POLDIP2Q9Y2S7 368 aa11.49□□□□□ -0.57
UPF3A-204ENST00000475218 WNK1Q9H4A3 2382 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 KCNAB3O43448 404 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 TK1P04183 234 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 GABRB1P18505 474 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 EEF1B2P24534 225 aaKnown RBP11.48□□□□□ -0.57
UPF3A-204ENST00000475218 CDC42P60953 191 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 SNRPGP62308 76 aaKnown RBP11.48□□□□□ -0.57
UPF3A-204ENST00000475218 RPL31P62899 125 aaKnown RBP11.48□□□□□ -0.57
UPF3A-204ENST00000475218 TREML4Q6UXN2 200 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 TCF23Q7RTU1 214 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 RNF144BQ7Z419 303 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 BEND2Q8NDZ0 799 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 OR2G2Q8NGZ5 317 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 OR10AC1Q8NH08 325 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 DPAGT1Q9H3H5 408 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 FRRS1LQ9P0K9 344 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 IL36RNQ9UBH0 155 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 OR14J1Q9UGF5 321 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 GNG8Q9UK08 70 aa11.48□□□□□ -0.57
UPF3A-204ENST00000475218 H0YAE9 185 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 K7N7A8 449 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 CLPXO76031 633 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 VHLP40337 213 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 CAPZA1P52907 286 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 OR12D2P58182 307 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 OCLNQ16625 522 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 FDX2Q6P4F2 183 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 CRIP3Q6Q6R5 217 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 CBR4Q8N4T8 237 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 OR5D13Q8NGL4 314 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 TRUB1Q8WWH5 349 aaKnown RBP11.47□□□□□ -0.57
UPF3A-204ENST00000475218 RFKQ969G6 155 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 SLAMF9Q96A28 289 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 RNFT2Q96EX2 444 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 C16orf95Q9H693 158 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 RNF114Q9Y508 228 aa11.47□□□□□ -0.57
UPF3A-204ENST00000475218 MEX3AA1L020 520 aaKnown RBP11.46□□□□□ -0.57
UPF3A-204ENST00000475218 SLC1A7O00341 560 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms