RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PAX6P26367 422 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 POLR2IP36954 125 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 ACTR3P61158 418 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 CATSPERDQ86XM0 798 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 ANGPTL5Q86XS5 388 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 PPP1R35Q8TAP8 253 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 RORBQ92753 470 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 GABARAPL3Q9BY60 117 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 PPA2Q9H2U2 334 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 TCF7L1Q9HCS4 588 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 WARS2Q9UGM6 360 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 AP4S1Q9Y587 144 aa15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 MEGF11A6BM72 1044 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 ANKRD61A6NGH8 418 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 TSPAN15O95858 294 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 KRT8P05787 483 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 CCL3L1P16619 93 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 HTR1FP30939 366 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 ERVFRD-1P60508 538 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 IL24Q13007 206 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 ZNF273Q14593 569 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 ODF4Q2M2E3 257 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 SLC35E4Q6ICL7 350 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 CRIP3Q6Q6R5 217 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 YIPF7Q8N8F6 280 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 OR4M1Q8NGD0 313 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 SSX3Q99909 188 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 PKIBQ9C010 78 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 OR14J1Q9UGF5 321 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 ENOPH1Q9UHY7 261 aa15.28■□□□□ 0.04
CCDC88B-206ENST00000473405 F8VVB4 439 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 F8VWA3 439 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 TK1P04183 234 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 BMXP51813 675 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 C1orf146Q5VVC0 180 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 TRMT10AQ8TBZ6 339 aaKnown RBP15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 MEGF9Q9H1U4 602 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 OAZ3Q9UMX2 235 aa15.27■□□□□ 0.04
CCDC88B-206ENST00000473405 IGKV1-27A0A075B6S5 117 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 METTL15A6NJ78 407 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 H3BSH0 61 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 OR2T7P0C7T2 308 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 FCGR1AP12314 374 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 DLX6P56179 175 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 ISL1P61371 349 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 UBE2V2Q15819 145 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 AANATQ16613 207 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 LRRC75BQ2VPJ9 315 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 PRSS35Q8N3Z0 413 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 OR2T27Q8NH04 317 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 RNF166Q96A37 237 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 FAM234AQ9H0X4 552 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 PLEKHA1Q9HB21 404 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 USE1Q9NZ43 259 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 MTCH1Q9NZJ7 389 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 FBLN5Q9UBX5 448 aa15.26■□□□□ 0.03
CCDC88B-206ENST00000473405 A0A1W2PPH5 198 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 FAM230AA0A1W2PPH8 454 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 K7N7A8 449 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 SYT7O43581 403 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 ZNF737O75373 536 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 SULT1C4O75897 302 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 PIPP12273 146 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 COX7A1P24310 79 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 GABRA5P31644 462 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 LY6EQ16553 131 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 OR10H4Q8NGA5 316 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 PIFOQ8TCI5 191 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 UBE2FQ969M7 185 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 EME1Q96AY2 570 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 CHST5Q9GZS9 411 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 RIBC2Q9H4K1 309 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 HEXA-AS1Q9H8Q6 139 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 SIGLEC9Q9Y336 463 aa15.25■□□□□ 0.03
CCDC88B-206ENST00000473405 LOC107986453A0A1B0GWG9 222 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 CHST1O43916 411 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 KIR3DL2P43630 455 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 RASSF2P50749 326 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 EFNB2P52799 333 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 COL10A1Q03692 680 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 ZNF782Q6ZMW2 699 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 TCF23Q7RTU1 214 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 DYNAPQ8N1N2 210 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 ASCC1Q8N9N2 400 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 OR8J1Q8NGP2 316 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 SLAMF9Q96A28 289 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 CENPNQ96H22 339 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 CEP19Q96LK0 163 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 OSBPL10Q9BXB5 764 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 SLC7A11Q9UPY5 501 aa15.24■□□□□ 0.03
CCDC88B-206ENST00000473405 MEX3AA1L020 520 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-206ENST00000473405 C17orf98A8MV24 154 aa15.23■□□□□ 0.03
CCDC88B-206ENST00000473405 ZNF85Q03923 595 aa15.23■□□□□ 0.03
CCDC88B-206ENST00000473405 LHFPL4Q7Z7J7 247 aa15.23■□□□□ 0.03
CCDC88B-206ENST00000473405 IL36RNQ9UBH0 155 aa15.23■□□□□ 0.03
CCDC88B-206ENST00000473405 DNAH3Q8TD57 4116 aa15.23■□□□□ 0.03
CCDC88B-206ENST00000473405 hCG_1809904A0A1W2PP81 198 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 A0A1W2PPE2 198 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 A0A1W2PR64 198 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms