RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 GPR6P46095 362 aaPredicted RBP12.75□□□□□ -0.37
NPHP4-205ENST00000466897 OR3A4PP47883 348 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 KCNJ8Q15842 424 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 SMIM21Q3B7S5 101 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 TMEM155Q4W5P6 130 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 ELP2Q6IA86 826 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 MUC20Q8N307 709 aaPredicted RBP12.75□□□□□ -0.37
NPHP4-205ENST00000466897 OR5D18Q8NGL1 313 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 OR51F2Q8NH61 342 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 TBC1D15Q8TC07 691 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 PCDHB16Q9NRJ7 776 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 WIPI2Q9Y4P8 454 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 PPIAL4AQ9Y536 164 aa12.75□□□□□ -0.37
NPHP4-205ENST00000466897 TRAV38-1A0A0B4J264 116 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 IGKV1-12A0A0C4DH73 117 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 OOEPA6NGQ2 149 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 NOTOA8MTQ0 251 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 TRAPPC2LH3BP13 241 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 PPIHO43447 177 aaKnown RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 AKR7A2O43488 359 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 SPRY1O43609 319 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 PLATP00750 562 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 IL1AP01583 271 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 IGKV1D-12P01611 117 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 UBBP0CG47 229 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 EGR1P18146 543 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 GLRA1P23415 457 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 SDC2P34741 201 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 NR4A2P43354 598 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 CAPZA1P52907 286 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 GPR176Q14439 515 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 CARTPTQ16568 116 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 ZNF404Q494X3 552 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 LRRC28Q86X40 367 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 CLVS1Q8IUQ0 354 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 OR4D6Q8NGJ1 314 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 SLAMF9Q96A28 289 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 BPESC1Q9GZL8 116 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 FAM192AQ9GZU8 254 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 NAA50Q9GZZ1 169 aaKnown RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 RNF167Q9H6Y7 350 aa12.74□□□□□ -0.37
NPHP4-205ENST00000466897 SEBOXQ9HB31 216 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 MRPS28Q9Y2Q9 187 aaKnown RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 AK6Q9Y3D8 172 aaKnown RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 YLPM1P49750 1951 aaKnown RBP12.74□□□□□ -0.37
NPHP4-205ENST00000466897 CSMD1Q96PZ7 3565 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 IGHV4-30-2A0A087WSY4 118 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 A0A0G2JK05 382 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 IFITM5A6NNB3 132 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 ZNF701M0R085 212 aaPredicted RBP12.73□□□□□ -0.37
NPHP4-205ENST00000466897 AIPO00170 330 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 NDUFA2O43678 99 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 ANGPTL7O43827 346 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 HTR2CP28335 458 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 NCS1P62166 190 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 ZMYND11Q15326 602 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 DGUOKQ16854 277 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 MICBQ29980 383 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 NHLRC3Q5JS37 347 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 AWAT2Q6E213 333 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 ACP7Q6ZNF0 438 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 C1QL2Q7Z5L3 287 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 NR2C2APQ86WQ0 139 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 CROCCP3Q8IVE0 287 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 MRPS24Q96EL2 167 aaKnown RBP12.73□□□□□ -0.37
NPHP4-205ENST00000466897 C1orf147Q96MC9 270 aaPredicted RBP12.73□□□□□ -0.37
NPHP4-205ENST00000466897 S100A13Q99584 98 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 RBM38Q9H0Z9 239 aaKnown RBP12.73□□□□□ -0.37
NPHP4-205ENST00000466897 DNTTIP1Q9H147 329 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 METTL9Q9H1A3 318 aa12.73□□□□□ -0.37
NPHP4-205ENST00000466897 CR1P17927 2039 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 NOL3O60936 208 aaKnown RBP12.72□□□□□ -0.37
NPHP4-205ENST00000466897 NXPH2O95156 264 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 CDRT1O95170 752 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 BPNT1O95861 308 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 KNG1P01042 644 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 SFTPBP07988 381 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 BCL3P20749 454 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 NPBWR2P48146 333 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 OR10A3P58181 314 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 FGF12P61328 243 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 VBP1P61758 197 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 LSM3P62310 102 aaKnown RBP12.72□□□□□ -0.37
NPHP4-205ENST00000466897 ZNF146Q15072 292 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 RSU1Q15404 277 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 SPIN3Q5JUX0 258 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 ATPAF1Q5TC12 328 aaPredicted RBP12.72□□□□□ -0.37
NPHP4-205ENST00000466897 STUMQ69YW2 141 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 FIP1L1Q6UN15 594 aaKnown RBP12.72□□□□□ -0.37
NPHP4-205ENST00000466897 DCDC5Q6ZRR9 648 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 FAM58AQ8N1B3 248 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 SPICQ8N5J4 248 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 OR51T1Q8NGJ9 327 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 SLC25A28Q96A46 364 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 POM121Q96HA1 1249 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 WDR13Q9H1Z4 485 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 PLGRKTQ9HBL7 147 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 TMEM165Q9HC07 324 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 HMG20AQ9NP66 347 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 NDUFA13Q9P0J0 144 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms