RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SLC7A11Q9UPY5 501 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 DHDHQ9UQ10 334 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 PNMA8CA0A1B0GUJ8 204 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 CDIPTO14735 213 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 LHBP01229 141 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 CFHR2P36980 270 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 MDH2P40926 338 aaKnown RBP9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 SOX2P48431 317 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 LCN2P80188 198 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 ZMYND11Q15326 602 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 FAM201AQ5SY85 155 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF573Q86YE8 665 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 SERPINA12Q8IW75 414 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 OR10Z1Q8NGY1 313 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 TRMT10AQ8TBZ6 339 aaKnown RBP9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 LRRC29Q8WV35 223 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 TAF15Q92804 592 aaKnown RBP eCLIP9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 TMIGD2Q96BF3 282 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 CITED1Q99966 193 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 OPN4Q9UHM6 478 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 LRRC42Q9Y546 428 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 DOCK11Q5JSL3 2073 aa9.9□□□□□ -0.82
SQSTM1-206ENST00000466342 IGKV1-9A0A0C4DH69 117 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 TRBV5-5A0A0J9YX44 114 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 A0A1B0GUS0 222 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 FAM230AA0A1W2PPH8 454 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 F5H0A9 414 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 CLDN34H7C241 214 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 J3QT63 122 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 PIN1P1O15428 100 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF205O95201 554 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 KNG1P01042 644 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 CD2P06729 351 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 OCM2P0CE71 109 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 ATF1P18846 271 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 AZGP1P25311 298 aaKnown RBP9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 CD80P33681 288 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 MAP2K4P45985 399 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 HAAOP46952 286 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 FUT6P51993 359 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 RPS11P62280 158 aaKnown RBP eCLIP9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 HOXA4Q00056 320 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF404Q494X3 552 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 Q499Y3 187 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 HAGHLQ6PII5 290 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 C17orf107Q6ZR85 190 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 SVOPQ8N4V2 548 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 BOLLQ8N9W6 283 aaKnown RBP9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 DNAAF1Q8NEP3 725 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 OR5D14Q8NGL3 314 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 OR13C5Q8NGS8 318 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 OR13C9Q8NGT0 318 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 NPRL2Q8WTW4 380 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 WFDC12Q8WWY7 111 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 AQP3Q92482 292 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 UFD1Q92890 307 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 TMEM106AQ96A25 262 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 SPSB1Q96BD6 273 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 BORCS8Q96FH0 119 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 ZCCHC4Q9H5U6 513 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 ISYNA1Q9NPH2 558 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 ACOT13Q9NPJ3 140 aa9.89□□□□□ -0.83
SQSTM1-206ENST00000466342 IGKV1-27A0A075B6S5 117 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 TRAV38-1A0A0B4J264 116 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 OOEPA6NGQ2 149 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 CEACAM18A8MTB9 384 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 A8MXK9 166 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 SRRM5B3KS81 715 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 LGALS8O00214 317 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 SULT1B1O43704 296 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 SYNGR1O43759 233 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 RHBDL1O75783 438 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 WNT2P09544 360 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 VSIG8P0DPA2 414 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 PRKACBP22694 351 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 OMGP23515 440 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 RBP2P50120 134 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 EMX1Q04741 257 aaPredicted RBP9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 MLLT11Q13015 90 aaPredicted RBP9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 GPR50Q13585 617 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 KCNJ8Q15842 424 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 KCTD21Q4G0X4 260 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 ESCO2Q56NI9 601 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 TEX36Q5VZQ5 186 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 ASPHD2Q6ICH7 369 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 Q6ZPA2 131 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 LHFPL2Q6ZUX7 228 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF367Q7RTV3 350 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 C19orf18Q8NEA5 215 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF671Q8TAW3 534 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 THRSPQ92748 146 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 OPALINQ96PE5 141 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 TMEM246Q9BRR3 403 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 PKIBQ9C010 78 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 TMEM165Q9HC07 324 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 NEK6Q9HC98 313 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 MIOXQ9UGB7 285 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 LRCH1Q9Y2L9 728 aa9.88□□□□□ -0.83
SQSTM1-206ENST00000466342 POLDIP2Q9Y2S7 368 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms