RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SULT4A1Q9BR01 284 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 SPRY4Q9C004 299 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 ANXA10Q9UJ72 324 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 C14orf166Q9Y224 244 aaKnown RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 MED13Q9UHV7 2174 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 hCG_38984A0A1B0GV85 526 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 FAM221AA4D161 298 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 NEURL1O76050 574 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 SFTPBP07988 381 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 EDN3P14138 238 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 PPA1Q15181 289 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 PABPC1L2AQ5JQF8 200 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 TMEM42Q69YG0 159 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 RTL6Q6ICC9 239 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 BATF2Q8N1L9 274 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 PIGCQ92535 297 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 CMSS1Q9BQ75 279 aaKnown RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 FAM117AQ9C073 453 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 STRADBQ9C0K7 418 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 CYTL1Q9NRR1 136 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 MRPS18CQ9Y3D5 142 aaKnown RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 A0A1B0GW55 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 LNP1A1A4G5 178 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 F8VVB4 439 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 F8VWA3 439 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 APOC3P02656 99 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 MMP7P09237 267 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4L2P0CJ85 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4L3P0CJ86 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4L4P0CJ87 422 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4L5P0CJ88 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4L6P0CJ89 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4L7P0CJ90 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 OR5H8P0DN80 308 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 CTRB1P17538 263 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 CHATP28329 748 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 ARHGDIBP52566 201 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 PCBD1P61457 104 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 TAGLNQ01995 201 aaKnown RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 SURF2Q15527 256 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 CTRB2Q6GPI1 263 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 PRSS54Q6PEW0 395 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 ASCL4Q6XD76 172 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 LHFPL2Q6ZUX7 228 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 FOXRED2Q8IWF2 684 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 FBXL14Q8N1E6 418 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 POC1AQ8NBT0 407 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 ZBTB44Q8NCP5 570 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 OR2M7Q8NG81 312 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 OR10AD1Q8NGE0 317 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 OR1S2Q8NGQ3 325 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 C2orf50Q96LR7 162 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 ZPBPQ9BS86 351 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DNTTIP1Q9H147 329 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DUX4Q9UBX2 424 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 BOKQ9UMX3 212 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 NOSIPQ9Y314 301 aaKnown RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 DOCK7Q96N67 2140 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 SHANK1Q9Y566 2161 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 A0A096LPE4 126 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 A0A1W2PPZ6 126 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF850A8MQ14 1090 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 TRIM77I1YAP6 450 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 TERTO14746 1132 aaKnown RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 TSPAN4O14817 238 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 RRP8O43159 456 aaKnown RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 MRPL33O75394 65 aaKnown RBP7.75□□□□□ -1.17
SYNE1-217ENST00000466159 IFNA2P01563 188 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 FCGR3AP08637 254 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 S100A10P60903 97 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 PDZK1IP1Q13113 114 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 IL15RAQ13261 267 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 CDCP2Q5VXM1 449 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 PLCXD3Q63HM9 321 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 NSUN5P2Q63ZY6 315 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 ATRAIDQ6UW56 229 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 TMEM200AQ86VY9 491 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 CALHM1Q8IU99 346 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 STOML3Q8TAV4 291 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 SLC7A10Q9NS82 523 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 PLA2G3Q9NZ20 509 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 HSF4Q9ULV5 492 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 PCDHB10Q9UN67 800 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 FRYQ5TBA9 3013 aa7.75□□□□□ -1.17
SYNE1-217ENST00000466159 FAM166BA8MTA8 275 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 NUPL2O15504 423 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 LYL1P12980 280 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 CCL2P13500 99 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 TPT1P13693 172 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 CCNOP22674 350 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 RBMXP38159 391 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 LHX2P50458 406 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 FUT6P51993 359 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 FOXG1P55316 489 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 RBM39Q14498 530 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 OR8B8Q15620 311 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 TUSC5Q8IXB3 177 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 BAP18Q8IXM2 172 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 OSR2Q8N2R0 312 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 BPIFCQ8NFQ6 507 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms