RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CAPSLQ8WWF8 208 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF488Q96MN9 340 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 OR8B4Q96RC9 309 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 MNTQ99583 582 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 NRIP2Q9BQI9 281 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 PRRG3Q9BZD7 231 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 MMP28Q9H239 520 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 MOB1AQ9H8S9 216 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF702PQ9H963 129 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 SERTAD4Q9NUC0 356 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 TVP23BQ9NYZ1 205 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.75□□□□□ -0.69
HMGB3-204ENST00000448905 SLC22A13Q9Y226 551 aa10.75□□□□□ -0.69
HMGB3-204ENST00000448905 MEGF11A6BM72 1044 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 A6NDX4 124 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 LOC110117498-PIK3R3F6TDL0 507 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 F2RL2O00254 374 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 SYNGR1O43759 233 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 CHST1O43916 411 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 PIPP12273 146 aaPredicted RBP10.74□□□□□ -0.69
HMGB3-204ENST00000448905 CD33P20138 364 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 DYNLT3P51808 116 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 EDDM3BP56851 147 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 GNGT1P63211 74 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 MEF2CQ06413 473 aaPredicted RBP10.74□□□□□ -0.69
HMGB3-204ENST00000448905 PLA1AQ53H76 456 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 ZBTB49Q6ZSB9 765 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 ASCC1Q8N9N2 400 aaKnown RBP10.74□□□□□ -0.69
HMGB3-204ENST00000448905 BBS1Q8NFJ9 593 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 OR11H6Q8NGC7 330 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 OR5M11Q96RB7 305 aa10.74□□□□□ -0.69
HMGB3-204ENST00000448905 hADV38S2A0JD32 116 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 PQLC2LA1A4F0 135 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 AQP12BA6NM10 295 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 DHRS7CA6NNS2 312 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 DNAJC8O75937 253 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 SERPINA3P01011 423 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 IGLV3-1P01715 115 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 MRPL3P09001 348 aaKnown RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 PRKACGP22612 351 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 CALB2P22676 271 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 SLC2A5P22732 501 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 AZGP1P25311 298 aaKnown RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 VDAC2P45880 294 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 CEBPDP49716 269 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 IL24Q13007 206 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 HABP2Q14520 560 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF273Q14593 569 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 BCL2L15Q5TBC7 163 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 MINOS1Q5TGZ0 78 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 SLX4IPQ5VYV7 408 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 TMEM236Q5W0B7 351 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 TMEM42Q69YG0 159 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 CENPVQ7Z7K6 275 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 ANGPTL5Q86XS5 388 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 TMEM219Q86XT9 240 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 AQP12AQ8IXF9 295 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 ELMOD2Q8IZ81 293 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 WFDC9Q8NEX5 89 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 DNAJC9Q8WXX5 260 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 STMN2Q93045 179 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 AKR1E2Q96JD6 320 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 CNN2Q99439 309 aaKnown RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 CITED2Q99967 270 aaPredicted RBP10.73□□□□□ -0.69
HMGB3-204ENST00000448905 ADI1Q9BV57 179 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 PKIBQ9C010 78 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 SLC25A19Q9HC21 320 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 GPR173Q9NS66 373 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 OR52A1Q9UKL2 312 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 SNX5Q9Y5X3 404 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 MINOS1-NBL1R4GNA1 71 aa10.73□□□□□ -0.69
HMGB3-204ENST00000448905 FAM230AA0A1W2PPH8 454 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF670-ZNF695F2Z2N8 137 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 FAM107AO95990 144 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 TTRP02766 147 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 IGHV1-8P0DP01 117 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 MPZP25189 248 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 ARHGDIBP52566 201 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 COL10A1Q03692 680 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 SLC34A1Q06495 639 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 IL18R1Q13478 541 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF626Q68DY1 528 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF322Q6U7Q0 402 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-204ENST00000448905 CCBE1Q6UXH8 406 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-204ENST00000448905 EGFL6Q8IUX8 553 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 ENTHD1Q8IYW4 607 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 OR5AU1Q8NGC0 362 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 NDNFQ8TB73 568 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 CANT1Q8WVQ1 401 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 CCDC124Q96CT7 223 aaKnown RBP10.72□□□□□ -0.69
HMGB3-204ENST00000448905 SNX22Q96L94 193 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 ZNF714Q96N38 554 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 WNT10AQ9GZT5 417 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 PLEKHA1Q9HB21 404 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 HES4Q9HCC6 221 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.72□□□□□ -0.69
HMGB3-204ENST00000448905 DNAJB9Q9UBS3 223 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 GLS2Q9UI32 602 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 HILPDAQ9Y5L2 63 aa10.72□□□□□ -0.69
HMGB3-204ENST00000448905 R4GMQ9 66 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms