RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 BAMBIQ13145 260 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 IL18R1Q13478 541 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 TUSC1Q2TAM9 212 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 OGFRL1Q5TC84 451 aaPredicted RBP12.54□□□□□ -0.4
LIMS3-201ENST00000437679 BRD3OSQ6XYD6 125 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 UTS2BQ765I0 119 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 ZNRF1Q8ND25 227 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 DNAAF1Q8NEP3 725 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 OR13C3Q8NGS6 347 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 C8orf46Q8TAG6 207 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 CNIH3Q8TBE1 160 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 SDSLQ96GA7 329 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF649Q9BS31 505 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 COMMD4Q9H0A8 199 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 VCXQ9H320 206 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 ESM1Q9NQ30 184 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 MAB21L2Q9Y586 359 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 A0A1W2PQ09 198 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 TMEM212A6NML5 194 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 SLC1A7O00341 560 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 CASQ2O14958 399 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ATF1P18846 271 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 DCKP27707 260 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 PRDX2P32119 198 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ATP1B3P54709 279 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 UBA52P62987 128 aaKnown RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ADARB1P78563 741 aaKnown RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 GABPB1Q06547 395 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 BATF2Q8N1L9 274 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF561Q8N587 486 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 KIR3DL3Q8N743 410 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 OR10AC1Q8NH08 325 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 OR5AK2Q8NH90 309 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 GATAD2BQ8WXI9 593 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 LHX4Q969G2 390 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ZDHHC16Q969W1 377 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 CEP19Q96LK0 163 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF48Q96MX3 618 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 JAM3Q9BX67 310 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 DCLRE1BQ9H816 532 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 ZMAT3Q9HA38 289 aaKnown RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 NEK6Q9HC98 313 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 HES4Q9HCC6 221 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 OR14J1Q9UGF5 321 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 SOX21Q9Y651 276 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-201ENST00000437679 HSPE1-MOB4S4R3N1 261 aa12.53□□□□□ -0.4
LIMS3-201ENST00000437679 IGKV1-27A0A075B6S5 117 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 TRBV23-1A0A0A0MS06 115 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 CENPVL3A0A0U1RRI6 287 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 DNAJC9-AS1A6NH13 148 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 E9PI62 339 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 CYB5AP00167 134 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 KNG1P01042 644 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 LIMS3P0CW19 117 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 LIMS4P0CW20 117 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 MYL12AP19105 171 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 PRTN3P24158 256 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 AZGP1P25311 298 aaKnown RBP12.52□□□□□ -0.41
LIMS3-201ENST00000437679 CAPGP40121 348 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 MTCP1P56278 107 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 ERVK11-1P61568 191 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 MED21Q13503 144 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 RUSC1-AS1Q66K80 236 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 TMPRSS11AQ6ZMR5 421 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 LHFPL2Q6ZUX7 228 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 SLC25A26Q70HW3 274 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 VMO1Q7Z5L0 202 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 MKXQ8IYA7 352 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 CD177Q8N6Q3 437 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 OR51A4Q8NGJ6 313 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 SLAMF9Q96A28 289 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 SPSB1Q96BD6 273 aa12.52□□□□□ -0.41
LIMS3-201ENST00000437679 CHCHD3Q9NX63 227 aaKnown RBP12.52□□□□□ -0.41
LIMS3-201ENST00000437679 CAB39Q9Y376 341 aaPredicted RBP12.52□□□□□ -0.41
LIMS3-201ENST00000437679 IGHV1-69DA0A0B4J2H0 117 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 IGKV1-9A0A0C4DH69 117 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 TRBV2A0A0J9YWF9 115 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 H0YAE9 185 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 INMTO95050 263 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 ZFPL1O95159 310 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 IGHV1-69P01742 117 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 POU3F4P49335 361 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 BLMHQ13867 455 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 Q8IYB0 196 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 C8orf59Q8N0T1 100 aaPredicted RBP12.51□□□□□ -0.41
LIMS3-201ENST00000437679 FAM185AQ8N0U4 392 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 TSEN15Q8WW01 171 aaKnown RBP12.51□□□□□ -0.41
LIMS3-201ENST00000437679 GCDHQ92947 438 aaPredicted RBP12.51□□□□□ -0.41
LIMS3-201ENST00000437679 OPALINQ96PE5 141 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 DUX5Q96PT3 197 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 ELL3Q9HB65 397 aaPredicted RBP12.51□□□□□ -0.41
LIMS3-201ENST00000437679 MTCH1Q9NZJ7 389 aa12.51□□□□□ -0.41
LIMS3-201ENST00000437679 EXOSC1Q9Y3B2 195 aaKnown RBP12.51□□□□□ -0.41
LIMS3-201ENST00000437679 MDFIC2A0A1B0GVS7 189 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 M0R1W7 72 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 CEBPDP49716 269 aaPredicted RBP12.5□□□□□ -0.41
LIMS3-201ENST00000437679 ETV1P50549 477 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 GTF2A1P52655 376 aaPredicted RBP12.5□□□□□ -0.41
LIMS3-201ENST00000437679 DEFB112Q30KQ8 113 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 FIP1L1Q6UN15 594 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms