RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RABAC1Q9UI14 185 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 NBASA2RRP1 2371 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 LAIR1Q6GTX8 287 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 ROBO4Q8WZ75 1007 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 TM4SF18Q96CE8 201 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 DERL3Q96Q80 235 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 KLF16Q9BXK1 252 aaPredicted RBP6.46□□□□□ -1.37
VPS53-204ENST00000437048 DOT1LQ8TEK3 1739 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 HIST1H1DP16402 221 aaKnown RBP6.46□□□□□ -1.37
VPS53-204ENST00000437048 GALNSP34059 522 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 PCP4P48539 62 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 MEOX1P50221 254 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 KCNAB1Q14722 419 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 IZUMO4Q1ZYL8 232 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 C2orf27AQ580R0 203 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 SH2D5Q6ZV89 423 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 BARX1Q9HBU1 254 aaPredicted RBP6.46□□□□□ -1.37
VPS53-204ENST00000437048 AMDHD2Q9Y303 409 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 PYCARD-AS1I3L0S3 204 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 ZIC2O95409 532 aaPredicted RBP6.46□□□□□ -1.37
VPS53-204ENST00000437048 CEACAM3P40198 252 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 LSM6P62312 80 aaKnown RBP6.46□□□□□ -1.37
VPS53-204ENST00000437048 CIRBPQ14011 172 aaKnown RBP6.46□□□□□ -1.37
VPS53-204ENST00000437048 PQLC2Q6ZP29 291 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 PLPP7Q8NBV4 271 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 IL22RA2Q969J5 263 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 WBP2Q969T9 261 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 ASB16Q96NS5 453 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 BOCQ9BWV1 1114 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 MIXL1Q9H2W2 232 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 FEZF1A0PJY2 475 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 ZBTB42B2RXF5 422 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 NPIPB9F8W1W9 429 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 BCL2P10415 239 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 EMP3P54852 163 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 SPANXN5Q5MJ07 72 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 IGFLR1Q9H665 355 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 ICAM5Q9UMF0 924 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 TIMM9Q9Y5J7 89 aa6.46□□□□□ -1.37
VPS53-204ENST00000437048 BCORQ6W2J9 1755 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 MFSD2BA6NFX1 497 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 OR5M10Q6IEU7 315 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 LCN15Q6UWW0 184 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 OR5C1Q8NGR4 320 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 SDF2Q99470 211 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 C20orf24Q9BUV8 137 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 CLEC2DQ9UHP7 191 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 A0A1B0GX78 115 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 MASP2O00187 686 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 CHST1O43916 411 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 ELLP55199 621 aaPredicted RBP6.46□□□□□ -1.38
VPS53-204ENST00000437048 CARD18P57730 90 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 HLA-DRB5Q30154 266 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 LEXMQ3ZCV2 418 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 OR4S2Q8NH73 311 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 CYB5D2Q8WUJ1 264 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 ZG16BQ96DA0 208 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 SLC17A4Q9Y2C5 497 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 TDRD15B5MCY1 1934 aaKnown RBP6.46□□□□□ -1.38
VPS53-204ENST00000437048 TRBV5-4A0A0C4DH59 114 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 A8MUA0 341 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 AQP7O14520 342 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 PDCD6O75340 191 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 ZNF253O75346 499 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 FOLR2P14207 255 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 OR2B11Q5JQS5 317 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 LINC00469Q8N7U9 141 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 DYNLRB1Q9NP97 96 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 CREBZFQ9NS37 354 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 MOB4Q9Y3A3 225 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 TNFSF10P50591 281 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 TMEM52BQ4KMG9 183 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 SMUG1Q53HV7 270 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 SLC39A5Q6ZMH5 540 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 HMGCLL1Q8TB92 370 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 GUSBP08236 651 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 RNPS1Q15287 305 aaKnown RBP6.46□□□□□ -1.38
VPS53-204ENST00000437048 HSD11B1LQ7Z5J1 315 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 OR5A1Q8NGJ0 315 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 HAPLN2Q9GZV7 340 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 ST3GAL6Q9Y274 331 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 DIRC3C9JPN6 131 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 LMX1BO60663 402 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 PPIAP62937 165 aaKnown RBP6.46□□□□□ -1.38
VPS53-204ENST00000437048 GNG3P63215 75 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 MEF2BQ02080 365 aaPredicted RBP6.46□□□□□ -1.38
VPS53-204ENST00000437048 OR52E1Q8NGJ3 308 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 P2RY12Q9H244 342 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 PPP1R3CQ9UQK1 317 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 LOC390937A0A1W2PQ73 354 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 TCRBV5S1A1TA0A578 114 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 HELTA6NFD8 242 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 G3V3Y1 287 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 GYPBP06028 91 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 NPY1RP25929 384 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 TAS2R60P59551 318 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 SCGB1D4Q6XE38 83 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 IL19Q9UHD0 177 aa6.46□□□□□ -1.38
VPS53-204ENST00000437048 FREM3P0C091 2139 aa6.45□□□□□ -1.38
VPS53-204ENST00000437048 NPPBP16860 134 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms